[Paraview] 3.12.0 building issues due to Protobuf

[Biddiscombe, John A.]

I had a very similar problem on our cray (i.e. same error message), but it was not caused by protobuf. 
We have the standard libs in /usr/lib64, but when using icc/ifort the libstdc++ lib from
/opt/cray/blah/blah/something something should be linked and not the one from /usr/lib64

Have a look and see if there is another libstdc++ in a special gcc/4.4.5 dir somewhere - since you're using gcc (I was using icc) it may not be so trivial.

JB

-----Original Message-----
From: paraview-bounces at paraview.org [mailto:paraview-bounces at paraview.org] On Behalf Of Paul McIntosh
Sent: 22 December 2011 03:48
To: paraview at paraview.org
Subject: [Paraview] 3.12.0 building issues due to Protobuf

Hi All,

Just wondering if anyone has come across this problem and worked around it?

I am using modules and have the following configuration where I have protobuf built and available in /usr/local/protobuf/2.4.1

Currently Loaded Modulefiles:
  1) gmp/4.3.1           3) gcc/4.4.5           5) qt/4.6.2            7)
virtualgl/2.2.90    9) cmake/2.8.3
  2) mpfr/2.4.2          4) openmpi-gcc/1.4.3   6) python/2.7.1-gcc    8)
paraview/3.10.1    10) protobuf/2.4.1

The ParaView protobuf build seems to be doing everything on it's own, ignoring compiler paths, prebuilt libraries etc, with no cmake options except for switching on and off tests. So everything else builds but I get stuck below. 

[ 84%] Generating vtkPVMessage.pb.h, vtkPVMessage.pb.cc
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotobuf.so)
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotoc.so)
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotoc.so)
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotoc.so)
[ 84%] Built target protobuf_code_generation [ 84%] Building CXX object ParaViewCore/ServerImplementation/CMakeFiles/vtkPVServerImplementation.dir/v
tkPVSessionBase.cxx.o
In file included from
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkPVSessionBase.cxx:22:
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:30:29: error: vtkPVMessage.pb.h: No such file or directory In file included from /usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkPVSessionBase.cxx:22:
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:38: error: expected unqualified-id before â&â token /usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:38: error: expected â)â before â&â token /usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:38: error: expected initializer before â&â token
make[2]: ***
[ParaViewCore/ServerImplementation/CMakeFiles/vtkPVServerImplementation.dir/
vtkPVSessionBase.cxx.o] Error 1
make[1]: ***
[ParaViewCore/ServerImplementation/CMakeFiles/vtkPVServerImplementation.dir/
all] Error 2
make: *** [all] Error 2

Any hints?

Cheers,

Paul
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