[Paraview] Re: Intel Compiler on OSX

Thu Sep 7 13:51:02 EDT 2006

Ok. Did all that. I added the sourcing of the iccvars.sh to my .bashrc file.
Did a clean make and still the same problem when it gets to the point of
linking libvtkCommonTCL it dies with the same errors. I also noticed from
the verbose make file that at the link stage the intel library folder is not
being included as a link directory and neither are the intel libs..

(*(*(*__frustrated__#%@$#
-- 
Mike Jackson   Senior Research Engineer
Innovative Management & Technology Services

On 9/7/06 12:49 PM, "Dan White" <dan at chalkie.org.uk> wrote:

> Ahhh Yes!
> you must remember to source the file containing the environmental
> variables
> required by the compilers to find their stuff
> 
> read the instructions for the compiler package
> 
> should be something like
> 
> source /opt/intel/cc/9.1.029/bin/iccvars.sh
> 
> cheers
> 
> Dan
> 
> On 7 Sep 2006, at 19:34, Mike Jackson wrote:
> 
>> So I did the trick described and now I am getting:
>> 
>> ld: Undefined symbols:
>> __intel_fast_memcmp
>> __intel_fast_memcpy
>> ___libm_sse2_atan
>> ___libm_sse2_cos
>> ___libm_sse2_log10
>> ___libm_sse2_atan2
>> ___libm_sse2_sincos
>> ___libm_sse2_sin
>> 
>> I am guessing that I am missing a library path somewhere but Not
>> sure where.
>> Google isn't being helpful. I just found some references to
>> libirc.a and
>> libimf.a.
>> 
>> Any help would be appreciated.
>> 
>> Here is my cmake instantiation:
>> cmake -D CMAKE_C_COMPILER:FILEPATH=/usr/bin/icc -D
>> CMAKE_CXX_COMPILER:FILEPATH=/usr/bin/icc -D
>> CXX_COMPILER_OPTIONS:STRING=-cxxlib-icc,-dynamiclib,-L/opt/intel/cc/
>> 9.1.030/
>> lib/,-lirc,-limf,lsvml -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON ../
>> paraview-2.4.4/
>> 
>> 
>> Mike Jackson
>> 
>> On 9/7/06 12:19 PM, "Dan White" <dan at chalkie.org.uk> wrote:
>> 
>>> Hi,
>>> 
>>> Yes that trick works for me also for building VTK wit intel compilers
>>> 
>>> Paul,
>>> I had a look at your facilities and see you have a modern SGI IRIX
>>> environment, with python and VTK.
>>> If you are using CVS version of VTK,
>>> and you also have wxPython and ffmpeg...
>>> (I only have an ancient indigo2)
>>> 
>>> It might be interesting to test the performance of our python VTK
>>> application
>>> for 3D rendering of volume data, BioImageXD on a high end SGI.
>>> Using VTK multithreading it will use multiple processors for volume
>>> rendering,
>>> so a modern SGI visualisation machine  might be a good performer....
>>> 
>>> see svn repos at
>>> svn co https://svn.sourceforge.net/svnroot/bioimagexd/bioimagexd/
>>> trunk
>>> 
>>> Its written in python, with a few extra VTK C++ classes that need to
>>> be compiled into
>>> a recent CVS version of VTK
>>> 
>>> Also general install instructions at
>>> http://modeling.bio.jyu.fi:8080/bioimagexd/Wiki/GettingStarted#UNIX
>>> 
>>> We are also trying to get it running on a SunOS big iron machine
>>> corona.csc.fi
>>> 
>>> We are aiming to support these kind of  big iron systems for
>>> visualisation
>>> and  processing of very large 3D microscopy time series data sets.
>>> Multiple processors and large memory are important for doing this
>>> efficiently.
>>> 
>>> I'd be interested to see if BioImageXD will work as is on a high end
>>> SGI system
>>> with python2.4 wxpython VTK5(CVS) and ffmpeg (it makes movies too)
>>> 
>>> maybe it might be a nice tool for you also... who knows
>>> 
>>> cheers
>>> 
>>> Dan
>>> 
>>> On 7 Sep 2006, at 19:00, paraview-request at paraview.org wrote:
>>> 
>>>> 
>>>> Date: Thu, 7 Sep 2006 08:31:28 -0500
>>>> From: "Paul Adams" <paul.adams.jr at gmail.com>
>>>> Subject: Re: [Paraview] Intel Compiler on OS X
>>>> To: "Mike Jackson" <mike.jackson at imts.us>
>>>> Cc: "ParaView at paraview.org" <ParaView at paraview.org>
>>>> Message-ID:
>>>> <1e472b890609070631h5a521706o808b4505316658ac at mail.gmail.com>
>>>> Content-Type: text/plain; charset="iso-8859-1"
>>>> 
>>>> While I have not built Paraview for OS X, I did have to use an
>>>> alternate
>>>> compiler
>>>> on one of my Linux systems.  Like yours, it would reset the
>>>> compiler back to
>>>> default.
>>>> The way that I got around that was to use something like the
>>>> following:
>>>> 
>>>> % CC=/path/to/C/Compiler CXX=/path/to/C++/Compiler ccmake ../
>>>> paraview-2.4.4
>>>> 
>>>> Obviously I removed my path from the above since it would be of no
>>>> help to
>>>> you.
>>>> Just replace the above pseudo path with the appropriate one for you.
>>>> 
>>>> Paul Adams
>>>> Scientific Visualization Lead
>>>> ERDC MSRC - Vicksburg, MS
>>>> 
>>>> On 9/7/06, Mike Jackson <mike.jackson at imts.us> wrote:
>>>>> 
>>>>> So I was lucky and was able to purchase the Intel C++ compiler for
>>>>> OS X. I
>>>>> am now trying to use it to compile paraview and having a small
>>>>> problem.
>>>>> 
>>>>> When I run ccmake ../paraview  and set the CMAKE_CXX_COMPILER then
>>>>> hit the
>>>>> "c" key to configure the "CMAKE_CXX_COMPILER" goes back to /usr/
>>>>> bin/c++
>>>>> 
>>>>> So am I doing something wrong here?
>>>>> 
>>>>> If I get this going I would like to attempt Paraview 2.9 with QT
>>>>> and start
>>>>> putting in DART reports against the intel compiler.
>>>>> 
>>>>> Thanks
>>>>> --
>>>>> Mike Jackson   Senior Research Engineer
>>>>> Innovative Management & Technology Services
>>>>> 
>>> 
>>> Dr. Daniel James White BSc. (Hons.) PhD
>>> Bioimaging Coordinator
>>> Nanoscience Centre and Department of Biological and Environmental
>>> Sciences
>>> Division of Molecular Recognition
>>> Ambiotica C242
>>> PO Box 35
>>> University of Jyväskylä
>>> Jyväskylä
>>> FIN 40014
>>> Finland
>>> 
>>> +358 14 260 4183 (work)
>>> +358 468102840 (mobile)
>>> http://www.bioimagexd.org
>>> http://www.chalkie.org.uk
>>> dan at chalkie.org.uk
>>> white at cc.jyu.fi
>>> 
>>> 
>> 
>> 
>> 
> 
> Dr. Daniel James White BSc. (Hons.) PhD
> Bioimaging Coordinator
> Nanoscience Centre and Department of Biological and Environmental
> Sciences
> Division of Molecular Recognition
> Ambiotica C242
> PO Box 35
> University of Jyväskylä
> Jyväskylä
> FIN 40014
> Finland
> 
> +358 14 260 4183 (work)
> +358 468102840 (mobile)
> http://www.bioimagexd.org
> http://www.chalkie.org.uk
> dan at chalkie.org.uk
> white at cc.jyu.fi
> 
> 