[Midas] ParaView Web support for Midas
BRIAN E CHAPMAN
Brian.Chapman at utah.edu
Fri Nov 22 16:48:48 EST 2013
Zach,
I haven’t had any time recently to look into this, but I was wondering if
these error messages helped you at all in diagnosing the problem I’m
having in getting paraview to work with my Midas repository?
Brian
On 11/7/13, 1:34 PM, "BRIAN E CHAPMAN" <Brian.Chapman at utah.edu> wrote:
>Zach,
>
>I've got the terminal set to :0 in the config, which is what it is for my
>login on the virtual machine. I did finally get a more informative error
>message in dev.log, pasted below:
>
>2013-11-07 15:27:07 WARN (4): URL:
>http://155.100.62.165/midas/modules/pvw/public/import/lib/js/vtkweb-all.mi
>n.js
>Server IP: 155.100.62.165
>Client IP: 155.100.62.66
>User agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_0)
>AppleWebKit/537.36 (KHTML, like Gecko) Chrome/30.0.1599.101 Safari/537.36
>Server time: 2013-11-07 15:27:07
>RequestURI: /midas/modules/pvw/public/import/lib/js/vtkweb-all.min.js
>Referer: http://155.100.62.165/midas/pvw/paraview/volume?itemId=1
><b>Message: Invalid controller specified (modules)</b>
>
>Trace:
>#0 /usr/local/src/Midas3/library/Zend/Controller/Front.php(954):
>Zend_Controller_Dispatcher_Standard->dispatch(Object(Zend_Controller_Reque
>st_Http), Object(Zend_Controller_Response_Http))
>#1
>/usr/local/src/Midas3/library/Zend/Application/Bootstrap/Bootstrap.php(97)
>: Zend_Controller_Front->dispatch()
>#2 /usr/local/src/Midas3/library/Zend/Application.php(366):
>Zend_Application_Bootstrap_Bootstrap->run()
>#3 /usr/local/src/Midas3/index.php(73): Zend_Application->run()
>#4 {main}
>
>Request data: array (
> 'controller' => 'modules',
> 'action' => 'pvw',
> 'public' => 'import',
> 'lib' => 'js',
> 'module' => 'default',
>)
>
>Session data:
>Dao: __PHP_Incomplete_Class::__set_state(array(
> '__PHP_Incomplete_Class_Name' => 'UserDao',
> '_model' => 'User',
> 'key' => NULL,
> '_key' => 'user_id',
> 'saved' => true,
> 'user_id' => '1',
> 'firstname' => 'Brian',
> 'lastname' => 'Chapman',
> 'email' => 'brian.chapman at utah.edu',
> 'thumbnail' => NULL,
> 'company' => NULL,
> 'hash_alg' => 'sha256',
> 'salt' => 'uirWyLLLBDcN9udgEy2o0ZwZulN17z8s',
> 'creation' => '2013-10-24 14:09:40',
> 'folder_id' => '1',
> 'admin' => '1',
> 'privacy' => '0',
> 'view' => '0',
> 'uuid' => '52696264c0b08ca6ba63fc546fe5b950545d654ae59cc',
> 'city' => '',
> 'country' => '',
> 'website' => '',
> 'biography' => '',
> 'dynamichelp' => '1',
>))
>
>Last database query: SELECT `setting`.* FROM `setting` WHERE (name =
>'temp_directory') AND (module = 'core') LIMIT 1
>
>
>2013-11-07 15:28:57 WARN (4): Warning: symlink(): No such file or
>directory<br/>
> on line 222 in file
>/usr/local/src/Midas3/modules/pvw/controllers/components/ParaviewComponent
>.php<br/>
>
>________________________________________
>From: Zach Mullen [zach.mullen at kitware.com]
>Sent: Thursday, November 07, 2013 11:09 AM
>To: BRIAN E CHAPMAN
>Cc: midas at public.kitware.com
>Subject: Re: [Midas] ParaView Web support for Midas
>
>When you open a terminal and type `echo $DISPLAY` what is the value it
>shows? Whatever that is is what you should set the config option to in
>Midas.
>
>On Thu, Nov 7, 2013 at 12:52 PM, BRIAN E CHAPMAN <Brian.Chapman at utah.edu>
>wrote:
>> I now have dynamic help off, but am not getting more consistent error
>>messages. Sometimes I see more details sometimes (usually) I don't. I
>>did at one point see an error about bad display :0, so I've tried
>>toggling the DISPLAY env var between :0 and nothing but that doesn't
>>seem to make a difference. Also Midas tells me I've had errors but I
>>can't view any errors through the admin web interface (just spins and
>>spins). the dev.log in the Midas3 directory doesn't have any new errors
>>although the apache error log does generate a new error when I try to
>>visualize the file:
>>
>> [Thu Nov 07 10:47:10.191552 2013] [:error] [pid 6788] [client
>>155.100.62.66:61675] PHP Warning: Unknown: function 'NULL' not found or
>>invalid function name in Unknown on line 0, referer:
>>http://155.100.62.165/midas/pvw/paraview/volume?itemId=1
>>
>>
>>
>> ________________________________________
>> From: Zach Mullen [zach.mullen at kitware.com]
>> Sent: Thursday, November 07, 2013 10:33 AM
>> To: BRIAN E CHAPMAN
>> Cc: midas at public.kitware.com
>> Subject: Re: [Midas] ParaView Web support for Midas
>>
>> Did you turn the Dynamic Help option off in the admin page? I think
>> that might be eating the true error message.
>>
>> On Thu, Nov 7, 2013 at 12:30 PM, BRIAN E CHAPMAN
>><Brian.Chapman at utah.edu> wrote:
>>> So I downloaded the nightly build and installed it. I relinked the www
>>> directory as modules/pvw/public/import and got nothing. I replaced this
>>> directory with the tar file that Zach sent me yesterday. I know try to
>>>get a
>>> paraview visualization but get a timeout waiting to bind to port 9000
>>>again.
>>> Looking at dev.log I see the following error and warning:
>>>
>>> 2013-11-07 12:12:15 CRIT (2): Fatal Error: Array
>>>
>>> (
>>> [type] => 1
>>> [message] => AppController::isDynamicHelp(): The script tried to
>>>execute
>>> a method or access a property of an incomplete object. Please ensure
>>>that
>>> the class definition "UserDao" of the object you are trying
>>>to
>>> operate on was loaded _before_ unserialize() gets called or provide a
>>> __autoload() function to load the class definition
>>> [file] => /usr/local/src/Midas3/core/AppController.php
>>> [line] => 424
>>> [typeText] => E_ERROR
>>> )
>>>
>>>
>>> URL:
>>>
>>>http://155.100.62.165/midas/modules/pvw/public/import/lib/js/vtkweb-all.
>>>min.js
>>>
>>> Server IP: 155.100.62.165
>>> User agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_0)
>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/30.0.1599.101
>>>Safari/537.36
>>> Server time: 2013-11-07 12:12:15
>>> Referer: http://155.100.62.165/midas/pvw/paraview/volume?itemId=1
>>>
>>> Parameters (post): Array
>>> (
>>> )
>>>
>>> Brian
>>>
>>> ________________________________
>>> From: midas-bounces at public.kitware.com
>>>[midas-bounces at public.kitware.com] on
>>> behalf of BRIAN E CHAPMAN [Brian.Chapman at utah.edu]
>>> Sent: Wednesday, November 06, 2013 6:41 PM
>>> To: Zach Mullen
>>> Cc: midas at public.kitware.com
>>>
>>> Subject: Re: [Midas] ParaView Web support for Midas
>>>
>>> It was the release. I'll try the nightly release tomorrow.
>>>
>>> Brian
>>>
>>> Brian
>>>
>>> Sent from my mobile device
>>>
>>> On Nov 6, 2013, at 5:28 PM, "Zach Mullen" <zach.mullen at kitware.com>
>>>wrote:
>>>
>>> Did you get the latest nightly package, or a release package? You will
>>>need
>>> to download the nightly one, since there have been Python API changes
>>>since
>>> the most recent official release.
>>>
>>>
>>> On Wed, Nov 6, 2013 at 7:25 PM, BRIAN E CHAPMAN
>>><Brian.Chapman at utah.edu>
>>> wrote:
>>>>
>>>> Looking at the paraview python source files
>>>>
>>>>ParaView-4.0.1-Linux-64bit/lib/paraview-4.0/site-packages/paraview/web.
>>>>py,
>>>> there is no “protocols” to import. Do we have a version mismatch
>>>>between
>>>> what Midas is expecting and the binary Paraview download?
>>>>
>>>> Brian
>>>>
>>>>
>>>> From: Sebastien Jourdain <sebastien.jourdain at kitware.com>
>>>> Date: Wednesday, November 6, 2013 at 12:02 PM
>>>> To: Brian Chapman <brian.chapman at utah.edu>
>>>> Cc: Zach Mullen <zach.mullen at kitware.com>, "midas at public.kitware.com"
>>>> <midas at public.kitware.com>
>>>>
>>>> Subject: Re: [Midas] ParaView Web support for Midas
>>>>
>>>> The issue might be related to the fact that you should add the "-f"
>>>> argument to the command line as Jetty may think that the process is
>>>>not
>>>> started yet.
>>>> The -f will force to flush the output of the python process. This was
>>>> added lately to prevent the +++++ to show up when running from the
>>>>command
>>>> line.
>>>>
>>>> Hope that helps.
>>>>
>>>> Seb
>>>>
>>>>
>>>> On Wed, Nov 6, 2013 at 11:56 AM, BRIAN E CHAPMAN
>>>><Brian.Chapman at utah.edu>
>>>> wrote:
>>>>>
>>>>> Progress but not quite there. I do now actually get an attempt to
>>>>>launch
>>>>> Paraview but a timeout occurs:
>>>>>
>>>>> Starting ParaviewWeb instance
>>>>>
>>>>> Waiting for binding on port 9000...
>>>>> Instance creation failed: Instance did not bind to port within 5
>>>>>seconds.
>>>>>
>>>>> Log content: Traceback (most recent call last):
>>>>> File "/usr/local/src/Midas3/modules/pvw/apps/midas.py", line 19, in
>>>>> from paraview.web import protocols, wamp
>>>>> ImportError: cannot import name protocols
>>>>>
>>>>>
>>>>> I’ll have to check configuration this afternoon.
>>>>>
>>>>> Brian
>>>>>
>>>>>
>>>>> On 11/6/13, 11:04 AM, "Zach Mullen" <zach.mullen at kitware.com> wrote:
>>>>>
>>>>> >Ok, good to know. I packaged up the correct www dir and attached it
>>>>>to
>>>>> >this email, dump that directory into the module's public dir as a
>>>>> >directory named "import" (apps, ext, and lib should be directly
>>>>> >underneath import). That should hopefully fix the issue.
>>>>> >
>>>>> >Thanks,
>>>>> >
>>>>> >Zach
>>>>> >
>>>>> >On Wed, Nov 6, 2013 at 1:00 PM, BRIAN E CHAPMAN
>>>>><Brian.Chapman at utah.edu>
>>>>> >wrote:
>>>>> >> Yes. I¹m using the packaged binary. I was having a difficult time
>>>>> >>getting
>>>>> >> Paraview to compile on my machine.
>>>>> >>
>>>>> >> Brian
>>>>> >>
>>>>> >> On 11/6/13, 10:56 AM, "Zach Mullen" <zach.mullen at kitware.com>
>>>>>wrote:
>>>>> >>
>>>>> >>>After looking into it, it looks like this is actually only the
>>>>>case
>>>>> >>>with the packaged version of ParaView, not one built from source.
>>>>> >>>Brian, are you using the downloaded paraview package or building
>>>>>from
>>>>> >>>source?
>>>>> >>>
>>>>> >>>On Wed, Nov 6, 2013 at 7:10 AM, Zach Mullen
>>>>><zach.mullen at kitware.com>
>>>>> >>>wrote:
>>>>> >>>> This is indeed the issue I discovered yesterday. Some files were
>>>>> >>>> moved
>>>>> >>>> within ParaView and it broke compatibility with the Midas
>>>>>plugin. I
>>>>> >>>>should
>>>>> >>>> have a fix committed to next branch this morning.
>>>>> >>>>
>>>>> >>>> Thanks,
>>>>> >>>>
>>>>> >>>> Zach
>>>>> >>>>
>>>>> >>>>
>>>>> >>>> On Tue, Nov 5, 2013 at 11:32 PM, Patrick Reynolds
>>>>> >>>> <patrick.reynolds at kitware.com> wrote:
>>>>> >>>>>
>>>>> >>>>> Brian,
>>>>> >>>>>
>>>>> >>>>> This looks like it could be related to the symbolic link of the
>>>>> >>>>>vtkweb
>>>>> >>>>> javascript. This may be related to an issue that Zach is
>>>>>tracking.
>>>>> >>>>>
>>>>> >>>>> --
>>>>> >>>>> Patrick Reynolds
>>>>> >>>>> Technical Leader
>>>>> >>>>> Kitware, Inc.
>>>>> >>>>> 919 869 8848
>>>>> >>>>>
>>>>> >>>>> On Tuesday, October 29, 2013 at 5:15 PM, BRIAN E CHAPMAN wrote:
>>>>> >>>>>
>>>>> >>>>> Patrick,
>>>>> >>>>>
>>>>> >>>>> I've been toggling the dynamic help and looking at the logs
>>>>>(apache
>>>>> >>>>>and
>>>>> >>>>> midas/log/dev.log). Here is what I am getting without and with
>>>>> >>>>>dynamic
>>>>> >>>>>help
>>>>> >>>>> turned on
>>>>> >>>>>
>>>>> >>>>> Dynamic help off:
>>>>> >>>>>
>>>>> >>>>> [Tue Oct 29 15:06:08.706120 2013] [:error] [pid 25319] [client
>>>>> >>>>> 155.100.62.145:54950] PHP Warning: Unknown: function 'NULL'
>>>>>not
>>>>> >>>>>found
>>>>> >>>>>or
>>>>> >>>>> invalid function name in Unknown on line 0,
>>>>> >>>>>
>>>>>referer:http://155.100.62.142/midas/pvw/paraview/volume?itemId=1
>>>>> >>>>>
>>>>> >>>>> 2013-10-29 17:06:08 WARN (4): URL:
>>>>> >>>>>
>>>>>
>>>>> >>>>>
>>>>>>>>>>http://155.100.62.142/midas/modules/pvw/public/import/lib/js/vtkw
>>>>>>>>>>eb-al
>>>>> >>>>>l.
>>>>> >>>>>min.js
>>>>> >>>>> Server IP: 155.100.62.142
>>>>> >>>>> Client IP: 155.100.62.145
>>>>> >>>>> User agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_5)
>>>>> >>>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/30.0.1599.101
>>>>> >>>>>Safari/537.36
>>>>> >>>>> Server time: 2013-10-29 17:06:08
>>>>> >>>>> RequestURI:
>>>>> >>>>> /midas/modules/pvw/public/import/lib/js/vtkweb-all.min.js
>>>>> >>>>> Referer:
>>>>>http://155.100.62.142/midas/pvw/paraview/volume?itemId=1
>>>>> >>>>> <b>Message: Invalid controller specified (modules)</b>
>>>>> >>>>>
>>>>> >>>>> Trace:
>>>>> >>>>> #0
>>>>>/usr/local/src/Midas3/library/Zend/Controller/Front.php(954):
>>>>> >>>>>
>>>>>
>>>>> >>>>>
>>>>>>>>>>Zend_Controller_Dispatcher_Standard->dispatch(Object(Zend_Control
>>>>>>>>>>ler_R
>>>>> >>>>>eq
>>>>> >>>>>uest_Http),
>>>>> >>>>> Object(Zend_Controller_Response_Http))
>>>>> >>>>> #1
>>>>> >>>>>
>>>>>
>>>>> >>>>>
>>>>>>>>>>/usr/local/src/Midas3/library/Zend/Application/Bootstrap/Bootstra
>>>>>>>>>>p.php
>>>>> >>>>>(9
>>>>> >>>>>7):
>>>>> >>>>> Zend_Controller_Front->dispatch()
>>>>> >>>>> #2 /usr/local/src/Midas3/library/Zend/Application.php(366):
>>>>> >>>>> Zend_Application_Bootstrap_Bootstrap->run()
>>>>> >>>>> #3 /usr/local/src/Midas3/index.php(73): Zend_Application->run()
>>>>> >>>>> #4 {main}
>>>>> >>>>>
>>>>> >>>>> Request data: array (
>>>>> >>>>> 'controller' => 'modules',
>>>>> >>>>> 'action' => 'pvw',
>>>>> >>>>> 'public' => 'import',
>>>>> >>>>> 'lib' => 'js',
>>>>> >>>>> 'module' => 'default',
>>>>> >>>>> )
>>>>> >>>>>
>>>>> >>>>> Session data:
>>>>> >>>>> Dao: __PHP_Incomplete_Class::__set_state(array(
>>>>> >>>>> '__PHP_Incomplete_Class_Name' => 'UserDao',
>>>>> >>>>> '_model' => 'User',
>>>>> >>>>> 'key' => NULL,
>>>>> >>>>> '_key' => 'user_id',
>>>>> >>>>> 'saved' => true,
>>>>> >>>>> 'user_id' => '1',
>>>>> >>>>> 'firstname' => 'Brian',
>>>>> >>>>> 'lastname' => 'Chapman',
>>>>> >>>>> 'email' => 'brian.chapman at utah.edu',
>>>>> >>>>> 'thumbnail' => NULL,
>>>>> >>>>> 'company' => NULL,
>>>>> >>>>> 'hash_alg' => 'sha256',
>>>>> >>>>> 'salt' => 'uirWyLLLBDcN9udgEy2o0ZwZulN17z8s',
>>>>> >>>>> 'creation' => '2013-10-24 14:09:40',
>>>>> >>>>> 'folder_id' => '1',
>>>>> >>>>> 'admin' => '1',
>>>>> >>>>> 'privacy' => '0',
>>>>> >>>>> 'view' => '0',
>>>>> >>>>> 'uuid' => '52696264c0b08ca6ba63fc546fe5b950545d654ae59cc',
>>>>> >>>>> 'city' => '',
>>>>> >>>>> 'country' => '',
>>>>> >>>>> 'website' => '',
>>>>> >>>>> 'biography' => '',
>>>>> >>>>> 'dynamichelp' => '1',
>>>>> >>>>> ))
>>>>> >>>>>
>>>>> >>>>> Last database query: SELECT `setting`.* FROM `setting` WHERE
>>>>>(name
>>>>> >>>>> =
>>>>> >>>>> 'temp_directory') AND (module = 'core') LIMIT 1
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> Dynamic Help ON:
>>>>> >>>>>
>>>>> >>>>> [Tue Oct 29 15:10:44.885671 2013] [:error] [pid 25321] [client
>>>>> >>>>> 155.100.62.145:55013] PHP Warning: Unknown: function 'NULL'
>>>>>not
>>>>> >>>>>found
>>>>> >>>>>or
>>>>> >>>>> invalid function name in Unknown on line 0,
>>>>> >>>>>
>>>>>referer:http://155.100.62.142/midas/pvw/paraview/volume?itemId=1
>>>>> >>>>> [Tue Oct 29 15:10:44.894376 2013] [:error] [pid 25319] [client
>>>>> >>>>> 155.100.62.145:55006] PHP Fatal error:
>>>>> >>>>>AppController::isDynamicHelp(): The
>>>>> >>>>> script tried to execute a method or access a property of an
>>>>> >>>>>incomplete
>>>>> >>>>> object. Please ensure that the class definition
>>>>>"UserDao"
>>>>> >>>>>of
>>>>> >>>>>the
>>>>> >>>>> object you are trying to operate on was loaded _before_
>>>>> >>>>> unserialize()
>>>>> >>>>>gets
>>>>> >>>>> called or provide a __autoload() function to load the class
>>>>> >>>>>definition
>>>>> >>>>> in
>>>>> >>>>> /usr/local/src/Midas3/core/AppController.php on line 424,
>>>>> >>>>>
>>>>>referer:http://155.100.62.142/midas/pvw/paraview/volume?itemId=1
>>>>> >>>>>
>>>>> >>>>> 2013-10-29 17:10:44 CRIT (2): Fatal Error: Array
>>>>> >>>>> (
>>>>> >>>>> [type] => 1
>>>>> >>>>> [message] => AppController::isDynamicHelp(): The script
>>>>>tried
>>>>> >>>>> to
>>>>> >>>>> execute a method or access a property of an incomplete object.
>>>>> >>>>> Please
>>>>> >>>>>ensure
>>>>> >>>>> that the class definition "UserDao" of the object
>>>>>you are
>>>>> >>>>>trying
>>>>> >>>>> to operate on was loaded _before_ unserialize() gets called or
>>>>> >>>>>provide
>>>>> >>>>>a
>>>>> >>>>> __autoload() function to load the class definition
>>>>> >>>>> [file] => /usr/local/src/Midas3/core/AppController.php
>>>>> >>>>> [line] => 424
>>>>> >>>>> [typeText] => E_ERROR
>>>>> >>>>> )
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> URL:
>>>>> >>>>>
>>>>>
>>>>> >>>>>
>>>>>>>>>>http://155.100.62.142/midas/modules/pvw/public/import/lib/js/vtkw
>>>>>>>>>>eb-al
>>>>> >>>>>l.
>>>>> >>>>>min.js
>>>>> >>>>>
>>>>> >>>>> Server IP: 155.100.62.142
>>>>> >>>>> User agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_5)
>>>>> >>>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/30.0.1599.101
>>>>> >>>>>Safari/537.36
>>>>> >>>>> Server time: 2013-10-29 17:10:44
>>>>> >>>>> Referer:
>>>>>http://155.100.62.142/midas/pvw/paraview/volume?itemId=1
>>>>> >>>>> Parameters (post): Array
>>>>> >>>>> (
>>>>> >>>>> )
>>>>> >>>>> Parameters (get): Array
>>>>> >>>>> (
>>>>> >>>>> )
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> Brian E. Chapman, Ph.D.
>>>>> >>>>> Associate Professor
>>>>> >>>>> Department of Radiology
>>>>> >>>>> University of Utah
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> From: Patrick Reynolds <patrick.reynolds at kitware.com>
>>>>> >>>>> Date: Tuesday, October 29, 2013 1:28 PM
>>>>> >>>>> To: Brian Chapman <Brian.Chapman at utah.edu>
>>>>> >>>>> Cc: "midas at public.kitware.com" <midas at public.kitware.com>
>>>>> >>>>> Subject: Re: [Midas] ParaView Web support for Midas
>>>>> >>>>>
>>>>> >>>>> Brian,
>>>>> >>>>>
>>>>> >>>>> Are you able to get to the admin page and disable dynamic help?
>>>>> >>>>>
>>>>> >>>>> That should yield an improved error message.
>>>>> >>>>>
>>>>> >>>>> --
>>>>> >>>>> Patrick Reynolds
>>>>> >>>>> Technical Leader
>>>>> >>>>> Kitware, Inc.
>>>>> >>>>> 919 869 8848
>>>>> >>>>>
>>>>> >>>>> On Thursday, October 24, 2013 at 6:58 PM, BRIAN E CHAPMAN
>>>>>wrote:
>>>>> >>>>>
>>>>> >>>>> Hi Zach, et al.,
>>>>> >>>>>
>>>>> >>>>> I'm making progress here. I looked at Sebastien's suggestion of
>>>>> >>>>> using
>>>>> >>>>> VirtualGL but decided to go back and build a VM with X11
>>>>>support.
>>>>> >>>>>I've
>>>>> >>>>>got
>>>>> >>>>> Midas running and ParaView web configured as per the web site
>>>>>and
>>>>> >>>>>Zach's
>>>>> >>>>> instructions. When I got to view an object (a 3D CT stored in
>>>>>.mha
>>>>> >>>>>format) I
>>>>> >>>>> get a blank canvas with "Volume rendering: pe0017s4.mha" on
>>>>>the top
>>>>> >>>>>and a
>>>>> >>>>> bunch of control widgets on the right.
>>>>> >>>>>
>>>>> >>>>> When I look at the apache2 logs I see the following.
>>>>> >>>>>
>>>>> >>>>> acces.log: 111.222.33.444 - - [24/Oct/2013:16:38:02 -0600] "GET
>>>>> >>>>> /midas/modules/pvw/public/import/lib/js/vtkweb-all.min.js
>>>>>HTTP/1.1"
>>>>> >>>>>500 936
>>>>> >>>>> "http://111.222.33.555/midas/pvw/paraview/volume?itemId=1"
>>>>> >>>>>"Mozilla/5.0
>>>>> >>>>> (X11; Ubuntu; Linux x86_64; rv:24.0) Gecko/20100101
>>>>>Firefox/24.0"
>>>>> >>>>>
>>>>> >>>>> error.log [Thu Oct 24 16:38:02.468812 2013] [:error] [pid 7303]
>>>>> >>>>>[client
>>>>> >>>>> 111.222.33.444:34502] PHP Fatal error:
>>>>> >>>>>AppController::isDynamicHelp(): The
>>>>> >>>>> script tried to execute a method or access a property of an
>>>>> >>>>>incomplete
>>>>> >>>>> object. Please ensure that the class definition
>>>>>"UserDao"
>>>>> >>>>>of
>>>>> >>>>>the
>>>>> >>>>> object you are trying to operate on was loaded _before_
>>>>> >>>>> unserialize()
>>>>> >>>>>gets
>>>>> >>>>> cal
>>>>> >>>>>
>>>>> >>>>> The midas log file is as follows:
>>>>> >>>>>
>>>>> >>>>> dev.log
>>>>> >>>>> Referer:
>>>>>http://111.222.33.555/midas/pvw/paraview/volume?itemId=1
>>>>> >>>>> Parameters (post): Array
>>>>> >>>>> (
>>>>> >>>>> )
>>>>> >>>>> Parameters (get): Array
>>>>> >>>>> (
>>>>> >>>>> )
>>>>> >>>>>
>>>>> >>>>> Any ideas as to what is going wrong?
>>>>> >>>>>
>>>>> >>>>> Brian
>>>>> >>>>>
>>>>> >>>>> Brian E. Chapman, Ph.D.
>>>>> >>>>> Associate Professor
>>>>> >>>>> Department of Radiology
>>>>> >>>>> University of Utah
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> From: Zach Mullen <zach.mullen at kitware.com>
>>>>> >>>>> Date: Thursday, October 17, 2013 11:54 AM
>>>>> >>>>> To: Brian Chapman <Brian.Chapman at utah.edu>
>>>>> >>>>> Cc: Patrick Reynolds <patrick.reynolds at kitware.com>,
>>>>> >>>>> "midas at public.kitware.com" <midas at public.kitware.com>
>>>>> >>>>> Subject: Re: [Midas] ParaView Web support for Midas
>>>>> >>>>>
>>>>> >>>>> Hi Brian,
>>>>> >>>>>
>>>>> >>>>> Answered your questions inline.
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> On Thu, Oct 17, 2013 at 1:49 PM, BRIAN E CHAPMAN
>>>>> >>>>><Brian.Chapman at utah.edu>
>>>>> >>>>> wrote:
>>>>> >>>>>
>>>>> >>>>> Patrick,
>>>>> >>>>>
>>>>> >>>>> That saved a lot of time! A couple of dummy questions. In
>>>>> >>>>> /var/www/midas/modules there is already a pvw directory. So
>>>>>where
>>>>> >>>>> am
>>>>> >>>>>I
>>>>> >>>>> supposed to create the symbolic link to
>>>>> >>>>>$PARAVIEW_ROOT/lib/paraview-4.0/www?
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> You should create a symlink at
>>>>> >>>>>/var/www/midas/modules/pvw/public/import,
>>>>> >>>>> and it should point to the paraview-4.0/www dir.
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> Also, just because I'm kind of dense, do I need to set the
>>>>>DISPLAY
>>>>> >>>>> environment variable. The pop-up help says "If the DISPLAY env
>>>>>var
>>>>> >>>>>should be
>>>>> >>>>> setŠ" I don't know if it should be.
>>>>> >>>>>
>>>>> >>>>> It depends what environment you are running in. If you plan on
>>>>> >>>>>running
>>>>> >>>>> this headlessly as a server, you will probably need to set the
>>>>> >>>>>environment
>>>>> >>>>> variable. If you are running the server within an already
>>>>>existing
>>>>> >>>>> X
>>>>> >>>>> environment, you probably won't need to set it. If you open a
>>>>> >>>>>terminal
>>>>> >>>>>and
>>>>> >>>>> type
>>>>> >>>>>
>>>>> >>>>> echo $DISPLAY
>>>>> >>>>>
>>>>> >>>>> It will show you the current value of your display ID.
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> Finally, is there a tutorial or demo for the Midas/ParaView
>>>>> >>>>>interface?
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> We just finished transitioning the demo application to the
>>>>>latest
>>>>> >>>>>version
>>>>> >>>>> of ParaViewWeb. The demo of the old capabilities is here:
>>>>> >>>>>
>>>>>
>>>>> >>>>>
>>>>>>>>>>http://50.58.123.185/external/midas/visualize/paraview/volume?ite
>>>>>>>>>>mId=4
>>>>> >>>>>4
>>>>> >>>>>
>>>>> >>>>> There isn't much currently in the way of developer-oriented
>>>>> >>>>>documentation
>>>>> >>>>> for the module; for that you might have to just consult us with
>>>>> >>>>> your
>>>>> >>>>> questions :)
>>>>> >>>>>
>>>>> >>>>> Thanks,
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> Thanks for the help.
>>>>> >>>>>
>>>>> >>>>> Brian
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> From: Patrick Reynolds <patrick.reynolds at kitware.com>
>>>>> >>>>> Date: Thursday, October 17, 2013 11:12 AM
>>>>> >>>>> To: Brian Chapman <Brian.Chapman at utah.edu>
>>>>> >>>>> Cc: "midas at public.kitware.com" <midas at public.kitware.com>
>>>>> >>>>> Subject: Re: [Midas] ParaView Web support for Midas
>>>>> >>>>>
>>>>> >>>>> Brian,
>>>>> >>>>>
>>>>> >>>>> You'll need to build Paraview Web from Source or download
>>>>>binaries.
>>>>> >>>>>It
>>>>> >>>>> comes with paraview, so you should be able to follow the
>>>>> >>>>> instructions
>>>>> >>>>> stemming from this wiki page:
>>>>> >>>>>
>>>>> >>>>> http://www.paraview.org/Wiki/ParaViewWeb
>>>>> >>>>>
>>>>> >>>>> HTH.
>>>>> >>>>>
>>>>> >>>>> --
>>>>> >>>>> Patrick Reynolds
>>>>> >>>>> Technical Leader
>>>>> >>>>> Kitware, Inc.
>>>>> >>>>> 919 869 8848
>>>>> >>>>>
>>>>> >>>>> On Thursday, October 17, 2013 at 12:56 PM, BRIAN E CHAPMAN
>>>>>wrote:
>>>>> >>>>>
>>>>> >>>>> Hello Midas World,
>>>>> >>>>>
>>>>> >>>>> I'm trying to build an instance of Midas with ParaviewWeb
>>>>>enabled.
>>>>> >>>>>I'm
>>>>> >>>>> working on an Ubuntu 12.04 instance. Midas built fine, but I'm
>>>>> >>>>>having a
>>>>> >>>>> difficult time getting Paraview to build. Just curious if the
>>>>> >>>>> paraview-python package that is available in the ubuntu
>>>>> >>>>> distribution
>>>>> >>>>>is
>>>>> >>>>> sufficient for this purpose? If it is, curious about the
>>>>>details of
>>>>> >>>>>the
>>>>> >>>>> configuration for the instructions: "Make sure to symlink the
>>>>>www
>>>>> >>>>>directory
>>>>> >>>>> of your ParView build directoryŠ"
>>>>> >>>>>
>>>>> >>>>> I'm suspicious of the package since when I try to run pvpython
>>>>>I
>>>>> >>>>> get
>>>>> >>>>>an
>>>>> >>>>> error:
>>>>> >>>>>
>>>>> >>>>> "Error converting executable file
>>>>> >>>>> "/usr/bin/../lib/paraview/pvpython"
>>>>> >>>>>to
>>>>> >>>>> real path: no such file or directory"
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> Brian E. Chapman, Ph.D.
>>>>> >>>>> Associate Professor
>>>>> >>>>> Department of Radiology
>>>>> >>>>> University of Utah
>>>>> >>>>>
>>>>> >>>>> _______________________________________________
>>>>> >>>>> Midas mailing list
>>>>> >>>>> Midas at public.kitware.com
>>>>> >>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/midas
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> _______________________________________________
>>>>> >>>>> Midas mailing list
>>>>> >>>>> Midas at public.kitware.com
>>>>> >>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/midas
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>> --
>>>>> >>>>> Zach Mullen
>>>>> >>>>> R & D Engineer
>>>>> >>>>> Kitware Inc.
>>>>> >>>>> 919-869-8858
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>>
>>>>> >>>>
>>>>> >>>>
>>>>> >>>>
>>>>> >>>> --
>>>>> >>>> Zach Mullen
>>>>> >>>> R & D Engineer
>>>>> >>>> Kitware Inc.
>>>>> >>>> 919-869-8858
>>>>> >>>
>>>>> >>>
>>>>> >>>
>>>>> >>>--
>>>>> >>>Zach Mullen
>>>>> >>>R & D Engineer
>>>>> >>>Kitware Inc.
>>>>> >>>919-869-8858
>>>>> >>
>>>>> >
>>>>> >
>>>>> >
>>>>> >--
>>>>> >Zach Mullen
>>>>> >R & D Engineer
>>>>> >Kitware Inc.
>>>>> >919-869-8858
>>>>>
>>>>> _______________________________________________
>>>>> Midas mailing list
>>>>> Midas at public.kitware.com
>>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/midas
>>>>
>>>>
>>>
>>>
>>>
>>> --
>>> Zach Mullen
>>> R & D Engineer
>>> Kitware Inc.
>>> 919-869-8858
>>>
>>> _______________________________________________
>>> Midas mailing list
>>> Midas at public.kitware.com
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/midas
>>
>>
>>
>> --
>> Zach Mullen
>> R & D Engineer
>> Kitware Inc.
>> 919-869-8858
>
>
>
>--
>Zach Mullen
>R & D Engineer
>Kitware Inc.
>919-869-8858
>_______________________________________________
>Midas mailing list
>Midas at public.kitware.com
>http://public.kitware.com/cgi-bin/mailman/listinfo/midas
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