[Insight-users] VNL 1.14 and ITK 3.20

Thu May 26 10:18:06 EDT 2011

Bill,

Can we get your patch incorporated into ITKv3?

Thanks,
Hans

--
Hans J. Johnson, Ph.D.
hans-johnson at uiowa.edu
Assistant Professor of Psychiatry
University of Iowa Carver College of Medicine
W278 GH, 200 Hawkins Drive

Iowa City, Iowa 52242
Phone:  319-353-8587

-----Original Message-----
From: Estanislao Oubel <stan.oubel at gmail.com>
Date: Thu, 26 May 2011 16:12:31 +0200
To: Bill Lorensen <bill.lorensen at gmail.com>
Cc: <insight-users at itk.org>
Subject: Re: [Insight-users] VNL 1.14 and ITK 3.20

yes it works ! thanks !

Le 26/05/2011 14:22, Bill Lorensen a écrit :
> Not in ITK3.20.
>
> Did my fix work?
>
> On Thu, May 26, 2011 at 4:03 AM, francois rousseau<rousseau at unistra.fr>
>wrote:
>
>> Would it be possible to avoid the compilation of the FEM module ?
>>
>> françois
>>
>>
>> On May 24, 2011, at 4:25 PM, Bill Lorensen wrote:
>>
>>
>>> The VXL folks made a non backward-compatible change to their API. The
>>> following change has been made in ITKv4, but not ITK3.20.
>>>
>>>
>>> In itkFEMLinearSystemWrapperVNL.cxx
>>> go to the error line and replace it with the following:
>>>
>>> #if VXL_VERSION_MAJOR == 1&&  VXL_VERSION_MINOR == 9
>>> ((*m_Matrices)[LeftMatrixIndex])->mult(
>>> *((*m_Matrices)[RightMatrixIndex]),
>>> *((*m_Matrices)[ResultMatrixIndex]) );
>>> #else
>>> *((*m_Matrices)[ResultMatrixIndex]) =
>>> *((*m_Matrices)[LeftMatrixIndex]) * (
>>>*((*m_Matrices)[RightMatrixIndex]));
>>> #endif
>>>
>>> On Tue, May 24, 2011 at 8:46 AM, Estanislao
>>>Oubel<stan.oubel at gmail.com>  wrote:
>>>
>>>> Hi all,
>>>>
>>>> I'd like to use VNL 1.14 with ITK 3.20 because the vnl_sparse_matrix
>>>> includes several
>>>> useful methods absent in the VNL version included in ITK 3.20
>>>> (sparse matrix multiplication for example)
>>>>
>>>> I've set ITK_USE_SYSTEM_VXL to ON but I get some compilation errors:
>>>>
>>>> [100%] [100%] [100%] Building CXX object
>>>> Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/itkFEMUtility.o
>>>> Building CXX object
>>>> Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/itkFEMInitialization.o
>>>> Building C object Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/dsrc2c.o
>>>> /home/miv/oubel/lib/vxl-1.14.0/core/vnl/vnl_sparse_matrix.h: In member
>>>> function Œvirtual void
>>>> itk::fem::LinearSystemWrapperVNL::MultiplyMatrixMatrix(unsigned int,
>>>> unsigned int, unsigned int)¹:
>>>> /home/miv/oubel/lib/vxl-1.14.0/core/vnl/vnl_sparse_matrix.h:268:
>>>>error:
>>>> Œvoid vnl_sparse_matrix<T>::mult(const vnl_sparse_matrix<T>&,
>>>> vnl_sparse_matrix<T>&) const [with T = double]¹ is protected
>>>>
>>>>/home/miv/oubel/lib/InsightToolkit-3.20.0/Code/Numerics/FEM/itkFEMLinea
>>>>rSystemWrapperVNL.cxx:265:
>>>> error: within this context
>>>> make[2]: ***
>>>>
>>>>[Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/itkFEMLinearSystemWrapperVNL.o
>>>>]
>>>> Erreur 1
>>>> make[2]: *** Attente des tâches non terminées....
>>>> make[1]: *** [Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/all] Erreur 2
>>>> make[1]: *** Attente des tâches non terminées....
>>>> Linking CXX shared library ../../bin/libITKIOReview.so
>>>> [100%] Built target ITKIOReview
>>>> Linking CXX executable ../../bin/itkTestDriver
>>>> [100%] Built target itkTestDriver
>>>> make: *** [all] Erreur 2
>>>>
>>>> Am I doing anything wrong? Have you found similar problems?
>>>>
>>>> Best
>>>>
>>>> stan
>>>>
>>>>
>>>>
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>>>>
>>> _____________________________________
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>>>
>>> Visit other Kitware open-source projects at
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>>> Kitware offers ITK Training Courses, for more information visit:
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>>> Please keep messages on-topic and check the ITK FAQ at:
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>>>
>> --
>> ---------------------------
>> Francois Rousseau
>> LSIIT
>> Pôle API
>> Boulevard Sébastien Brant
>> F-67400 ILLKIRCH
>> tel : +33 3 68 85 44 89
>> email : rousseau at unistra.fr
>> http://lsiit-miv.u-strasbg.fr/miv/19-ROUSSEAU-Francois.html
>>
>>
>>

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