[Insight-users] mrc data format

[Shekhar Chandra]

Hi Guys,

ITK has the MRCImageIO class in the Code Review area for MRC images. I 
have used it successfully.

Compile ITK with Use Review code ON and use it something like

ReaderType::Pointer stackReader = ReaderType::New();
             stackReader->SetImageIO( itk::MRCImageIO::New() );
             stackReader->SetFileName( argv[1] );

HTH
Cheers
Shakes

On 14/10/2010 3:23 AM, Jeff Donner wrote:
> I have code just about ready to go - I just need to rebase the patches
> for the current build. I've been holding off because I've been
> confused about the meaning of MRC's orientation, for non-orthogonal
> (and maybe for any rotation at all) cases. I'm not a dev; perhaps I'll
> post them to this list, for someone else to do the commits. If
> anyone's in a hurry I can just post what I have, but otherwise I
> estimate maybe 2 days.
>
> On Wed, Oct 13, 2010 at 1:44 AM, Sergio Vera<sergio.vera at alma3d.com>  wrote:
>> Hi
>> One of the improvements of the next version of ITK (v4) will be better
>> support for microscopy images:
>> http://www.itk.org/Wiki/ITK_Release_4/Microscopy
>> however, I don't know the specific file formats that ITK will or will  not
>> support.
>> It may be a good idea to get in touch with some of the developers to give a
>> hand and/or publish your code
>> regards
>> On Wed, Oct 13, 2010 at 6:38 AM, Mauro Maiorca<mauromaiorca at gmail.com>
>> wrote:
>>>
>>> Hello all,
>>>
>>> I'm currently working with electron microscope images, and I found  ITK
>>> and related applications (i.e. itk-snap) very useful.
>>> Unfortunately, it seems to me that ITK doesn't (natively) support the mrc
>>> file format. Am I right? There is any plan to include microscopy file
>>> formats into itk?
>>> (At the moment I'm using a mrc-MetaIO (and vice-versa) converter I wrote,
>>> I don't have any problem to publish the software somewhere if useful to
>>> other people).
>>>
>>> cheers,
>>> Mauro
>>>
>>>
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>>
>>
>>
>> --
>> Sergio Vera
>>
>>   Alma IT Systems
>>   C/ Vilana, 4B, 4º 1ª
>>   08022 Barcelona
>>   T. (+34) 932 380 592
>>   www.alma3d.com
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
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>>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-users
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