Fwd: [Insight-users] Analyze_Series

Fri Dec 3 12:58:27 EST 2004

Hi Yasser

1) The elements of the argv array are pointers to chars
    that have been assigned from the strings in the arguments
    of the command line.

    If you assign new values to such pointers you will not
    be able to recover the original values from the command
    line.

    If you need strings for holding the filenames of your
    images you should simply use the std::string class.


2) From the message of itkAnalyzeImageIO class, it seems that
    your images do not fit correctly in the analyze format.
    could you please make available one (or several) of such
    images so we can give them a try ?


3) Please double check that all the image files are in the
    directory that you specified and that you have *permission*
    for reading all of them.


Regards,


    Luis


---------------------
yasser salman wrote:

> Hi luis,
> thanks for ur notes., but what's the difference when i
> assign constat values in my code or read it from a
> command line?, 
> 1- my error message is
> "itk::ExceptionObject <00F8FBFC>
> Location :"Unknown"
> File:
> D:\InsightToolKit-1.6.0\Code\IOitkAnalyzeImageIO.cxx
> Line:862
> Description: File cannot be read.
> 
> 2- i add this to my code and it print all of them
> correctly,
> 
> std::vector<std::string> names =
> nameGenerator->GetFileNames();
>   std::vector<std::string>::iterator nit;
> 
>   for (nit = names.begin();
>        nit != names.end();
>        nit++)
>     {
>     std::cout << "File: " << (*nit).c_str() <<
> std::endl;
>     }
> 
> thanks luis,,.
> Regards
> yasser.., 
> 
> --- Luis Ibanez <luis.ibanez at kitware.com> wrote:
> 
> 
>>Hi Yasser,
>>
>>
>>Please *NEVER* assign values to the component of the
>>"argv[]" array.
>>
>>These strings are read from the command line, they
>>actually should be
>>treated as "const".
>>
>>
>>It is unfortunate that the compiler allowed you to
>>do something like:
>>
>> > argv[1]="C:/YASCOPY/ImageData/126_1/126_1_1.img";
>> >
>>argv[2]="C:/YASCOPY/ImageData/126_1/126_1_28.img";
>> > argv[3]="C:/YASCOPY/ImageData/126_1/Out";
>>
>>
>>
>>Please post the exact error message that you get.
>>You are probably
>>getting also the filename of the file that cannot be
>>read.
>>
>>It is a common mistake to provide a wrongly
>>constructed printf format
>>to the filenames generator.
>>
>>For double checking the names that you are
>>generating, you can get
>>the container returned by the GetFileNames() method
>>of the filename
>>generator, and print all of them.  Please look at
>>the Doxigen
>>documentation of the NumericSeriesFileNames class:
>>
>>
> 
> http://www.itk.org/Insight/Doxygen/html/classitk_1_1NumericSeriesFileNames.html
> 
>>
>>
>>   Regards,
>>
>>
>>
>>      Luis
>>
>>
>>
>>----------------------
>>yasser salman wrote:
>>
>>
>>>oops , i forgot the File, sorry, i attached it now
>>>Note: forwarded message attached.
>>>
>>>
>>>
>>>		
>>>__________________________________ 
>>>Do you Yahoo!? 
>>>The all-new My Yahoo! - What will yours do?
>>>http://my.yahoo.com 
>>>
>>>
>>>
>>
> ------------------------------------------------------------------------
> 
>>>Subject:
>>>[Insight-users] Analyze_Series
>>>From:
>>>yasser salman <yass71 at yahoo.com>
>>>Date:
>>>Mon, 29 Nov 2004 12:32:52 -0800 (PST)
>>>To:
>>>insight-users at itk.org
>>>
>>>
>>>hi all..,
>>>i modified the attachment file to read Analyze
>>
>>image ,
>>
>>>the following Error message appeared " File cannot
>>
>>be
>>
>>>read"
>>>i'm using Example found in IO directory, but i
>>
>>think i
>>
>>>have a problem
>>>in specify my series location also the output
>>
>>image
>>
>>>location (and name) can if u plz help me to fix
>>
>>the
>>
>>>problem.
>>>Note: my seires from ISBR and have no header,
>>>start slice 126_1_1.img End slice 126_1_28.img 
>>>i read it correctly (*without header*) when i
>>
>>convert
>>
>>>it to DICOM but i need to read it as its original
>>>format..,
>>>thanks .., 
>>>Yasser..,
>>>
>>>
>>>
>>>__________________________________________________
>>>Do You Yahoo!?
>>>Tired of spam?  Yahoo! Mail has the best spam
>>
>>protection around 
>>
>>>http://mail.yahoo.com 
>>>_______________________________________________
>>>Insight-users mailing list
>>>Insight-users at itk.org
>>>http://www.itk.org/mailman/listinfo/insight-users
>>>
>>>
>>>
>>
> ------------------------------------------------------------------------
> 
>>>
> /*=========================================================================
> 
>>>  Program:   Insight Segmentation & Registration
>>
>>Toolkit
>>
>>>  Module:    $RCSfile: ImageSeriesReadWrite.cxx,v
>>
>>$
>>
>>>  Language:  C++
>>>  Date:      $Date: 2003/12/29 15:27:22 $
>>>  Version:   $Revision: 1.1 $
>>>
>>>  Copyright (c) Insight Software Consortium. All
>>
>>rights reserved.
>>
>>>  See ITKCopyright.txt or
>>
>>http://www.itk.org/HTML/Copyright.htm for details.
>>
>>>     This software is distributed WITHOUT ANY
>>
>>WARRANTY; without even 
>>
>>>     the implied warranty of MERCHANTABILITY or
>>
>>FITNESS FOR A PARTICULAR 
>>
>>>     PURPOSE.  See the above copyright notices for
>>
>>more information.
>>
>>>
> =========================================================================*/
> 
>>>//  Software Guide : BeginLatex
>>>//
>>>//  This example illustrates how to read a series
>>
>>of 2D slices from independent
>>
>>>//  files in order to compose a volume. The class
>>
>>\doxygen{ImageSeriesReader}
>>
>>>//  is used for this purpose. This class works in
>>
>>combination with a generator
>>
>>>//  of filenames that will provide a list of files
>>
>>to be read. In this
>>
>>>//  particular example we use the
>>
>>\doxygen{NumericSeriesFileNames} class as
>>
>>>//  filename generator. This generator uses a
>>
>>\code{printf} style of string format
>>
>>>//  with a ``\%d'' field that will be succesively
>>
>>replaced by a number specified
>>
>>>//  by the user. Here we will use a format like
>>
>>``file\%04d.png'' for reading 
>>
>>>//  PNG files named file0001.png, file0002.png,
>>
>>file0003.png... and so on.
>>
>>>//
>>>//  This requires the following headers as shown.
>>>//
>>>//  \index{itk::ImageSeriesReader!header}
>>>//  \index{itk::NumericSeriesFileNames!header}
>>>//
>>>//  Software Guide : EndLatex 
>>>
>>>// Software Guide : BeginCodeSnippet
>>>#include "itkImage.h"
>>>#include "itkImageSeriesReader.h"
>>>#include "itkImageFileWriter.h"
>>>#include "itkNumericSeriesFileNames.h"
>>>#include "itkAnalyzeImageIO.h"
>>>// Software Guide : EndCodeSnippet
>>>
>>>
>>>int main( int argc, char ** argv )
>>>{
>>>  // Verify the number of parameters in the
>>
>>command line
>>
>>>
>>>  // Software Guide : BeginLatex
>>>  //
>>>  // We start by defining the \code{PixelType} and
>>
>>\code{ImageType}.
>>
>>>  //
>>>  //
>>>  // Software Guide : EndLatex 
>>>
>>>  // Software Guide : BeginCodeSnippet
>>>  typedef unsigned char                      
>>
>>PixelType;
>>
>>>  const unsigned int Dimension = 3;
>>>
>>>  typedef itk::Image< PixelType, Dimension > 
>>
>>ImageType;
>>
> 
> === message truncated ===
> 
> 
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