[ITK-dev] [slicer-devel] build error in simpleitk
Isaiah Norton
isaiah.norton at gmail.com
Wed Jan 13 22:02:08 EST 2016
This is during authentication to Gerrit; the application asks for
repo-level access:
https://gist.github.com/ihnorton/76642485ff40eac0aa46
Which GitHub describes as:
> This is one of the most expansive configurations you can permit, so
accept it with caution!
https://help.github.com/articles/connecting-with-third-party-applications/#repositories
It's not really clear why KWRobot requires this level of access, given the
other OAuth scopes available:
https://developer.github.com/v3/oauth/#scopes
Some clarification would be useful (I've read
http://www.itk.org/Wiki/ITK/Git/Account, and looked around elsewhere, but
didn't find any prior discussion).
Isaiah
On Wed, Jan 13, 2016 at 9:01 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
wrote:
> Isaiah,
>
> There is no need for R/W. I don’t think you have configured your ITK
> development evnironment correctly. Are you running
> “SetupForDevelopment.sh” script?
>
> Hans
>
> From: Isaiah Norton <isaiah.norton at gmail.com>
> Date: Wednesday, January 13, 2016 at 7:59 PM
> To: Hans Johnson <hans-johnson at uiowa.edu>
> Cc: Bradley Lowekamp <brad at lowekamp.net>, SPL Slicer Devel <
> slicer-devel at bwh.harvard.edu>, Insight Developers <
> insight-developers at itk.org>
>
> Subject: Re: [ITK-dev] [slicer-devel] build error in simpleitk
>
> Brad, Hans: great, thanks!
>
> (as an aside: I would be happy to submit patches directly in the future,
> but it's not really clear why the Gerrit <-> GitHub KWRobot application
> asks for R/W on all GitHub repositories I have access to... It would be
> great if this could be reduced to the minimal necessary privileges for
> authentication)
>
> Isaiah
>
> On Wed, Jan 13, 2016 at 8:16 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
> wrote:
>
>> I’m making a patch for this.
>>
>> I’ve noticed this today as well.
>>
>> mkdir XX;
>> cd XX;
>> cmake -DCMAKE_CXX_STANDARD:STRING=11 ../ITK;
>> make –j23
>>
>> Before this patch, there was a build failure.
>> After this patch it is now building.
>>
>> I made modifications to more closely match upstream VXL.
>>
>> Gerrit- review at : http://review.source.kitware.com/#/c/20658/
>>
>> Hans
>>
>> From: Insight-developers <insight-developers-bounces at itk.org> on behalf
>> of Bradley Lowekamp <brad at lowekamp.net>
>> Date: Wednesday, January 13, 2016 at 6:38 PM
>> To: Isaiah Norton <isaiah.norton at gmail.com>
>> Cc: SPL Slicer Devel <slicer-devel at bwh.harvard.edu>, Insight Developers <
>> insight-developers at itk.org>
>> Subject: Re: [ITK-dev] [slicer-devel] build error in simpleitk
>>
>> Hello,
>>
>> The patch looks pretty good. Thank you for contributing.
>>
>> Can you please submit the patch to ITK Gerrit for review?
>>
>> http://www.itk.org/Wiki/ITK/Git/Develop
>>
>> Thanks
>> Brad
>>
>> On Jan 13, 2016, at 6:47 PM, Isaiah Norton <isaiah.norton at gmail.com>
>> wrote:
>>
>> (cc: insight-devel)
>>
>> We are also seeing this issue, and several SimpleITK dashboards are
>> failing with the same error for the OS X 10.9 (since bumping to ITK 4.9)
>> and 10.10 (since yesterday) dashboards:
>> https://open.cdash.org/buildSummary.php?buildid=4188623
>>
>> It looks like this is essentially caused by SimpleITK being compiled with
>> `-std=c++11`, whereas ITK (and VXL) are not. So, there is a mismatch
>> between the configured definition of `VCL_CONSTEXPR` and the `
>> VCL_STATIC_CONST_INIT_*` macros.
>>
>> For reference, VCL_CONSTEXPR was introduced here:
>> http://review.source.kitware.com/#/c/20386/
>>
>> A proposed patch [1] is attached.
>>
>> Best,
>> Isaiah
>>
>> [1]
>> https://github.com/ihnorton/ITK/commit/0f748d8c86ffb2369c3a343c0db5ca87b067843e
>>
>>
>>
>> On Mon, Jan 11, 2016 at 11:21 AM, Steve Pieper <pieper at isomics.com>
>> wrote:
>>
>>> Hi -
>>>
>>> This morning with Xcode 7.2 on mac 10.11.2 I get the build errors pasted
>>> below. This was in a fresh build directory. With SimpleITK turned off the
>>> build completes and everything works as expected.
>>>
>>> I found an old issue with similar errors [1] but nothing lately.
>>>
>>> -Steve
>>>
>>> [1] https://issues.itk.org/jira/browse/ITK-2976
>>>
>>>
>>>
>>>
>>> In file included from
>>> /Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_c_vector.h:26:
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:388:41:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'zero' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR float zero
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(0.0F);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:390:41:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'one' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR float one
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(1.0F);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:392:41:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'maxval' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR float maxval
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(3.40282346638528860e+38F);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:411:42:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'zero' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR double zero
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(0.0);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:413:42:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'one' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR double one
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(1.0);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:415:42:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'maxval' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR double maxval
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(1.7976931348623157E+308);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:434:47:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'zero' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR long double zero
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(0.0);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:436:47:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'one' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR long double one
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(1.0);
>>>
>>> * ^*
>>>
>>> */Users/pieper/slicer4/latest/Slicer-superbuild/ITKv4/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_numeric_traits.h:438:47:
>>> **error: **declaration of constexpr static data member*
>>>
>>> * 'maxval' requires an initializer*
>>>
>>> static VNL_EXPORT VCL_CONSTEXPR long double maxval
>>> VCL_STATIC_CONST_INIT_FLOAT_DECL(1.7976931348623157E+308);
>>>
>>> * ^*
>>>
>>> 9 errors generated.
>>>
>>> make[8]: ***
>>> [Code/Explicit/src/CMakeFiles/SimpleITKExplicit.dir/sitkExplicitITKComposeImageFilter.cxx.o]
>>> Error 1
>>>
>>> make[7]: *** [Code/Explicit/src/CMakeFiles/SimpleITKExplicit.dir/all]
>>> Error 2
>>>
>>> make[6]: *** [all] Error 2
>>>
>>> make[5]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build]
>>> Error 2
>>>
>>> make[4]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
>>>
>>> make[3]: *** [all] Error 2
>>>
>>> make[2]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build]
>>> Error 2
>>>
>>> make[1]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
>>>
>>> make: *** [all] Error 2
>>>
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>> <0001-COMP-fix-build-with-std-c-11-when-ITK-VXL-initially-.patch>
>>
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