[ITK-dev] link failure ITKVideoBridgeOpenCVHeaderTest1 on Ubuntu 14.04

Fri Aug 14 13:31:39 EDT 2015

I have also tried adding ITKVideoIO in TEST_DEPENDS (which does not make
much sense to me?), same link error...

If it helps, I can prepare a docker build file to track this error (for
anyone willing to help)?

Thanks

On Fri, Aug 14, 2015 at 6:59 PM, Williamson, Zachary E <
zachary-williamson at uiowa.edu> wrote:

> It's the test driver that is failing here, make sure that all of the
> modules needed for the tests are included under TEST_DEPENDS.
>
>
> ------------------------------
> *From:* Arnaud Gelas <arnaudgelas at gmail.com>
> *Sent:* Friday, August 14, 2015 11:34 AM
> *To:* Matt McCormick
> *Cc:* insight-developers at itk.org; Williamson, Zachary E
> *Subject:* Re: [ITK-dev] link failure ITKVideoBridgeOpenCVHeaderTest1 on
> Ubuntu 14.04
>
> Here is the resulting link error:
>
> [1563/1563] Linking CXX executable bin/ITKVideoBridgeOpenCVTestDriver
> FAILED: : && /usr/lib/ccache/c++   -Wall -Wextra  -Wall -Wcast-align
> -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch
> -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings
> -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof
> -Woverloaded-virtual -Wstrict-null-sentinel  -Wno-array-bounds -msse2 -g
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/ITKVideoBridgeOpenCVTestDriver.cxx.o
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoCaptureTest.cxx.o
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVImageBridgeGrayScaleTest.cxx.o
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVImageBridgeRGBTest.cxx.o
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOTest.cxx.o
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOFactoryTest.cxx.o
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVBasicTypeBridgeTest.cxx.o
> -o bin/ITKVideoBridgeOpenCVTestDriver  -rdynamic
> lib/libitkdouble-conversion-4.9.so.1 lib/libITKIOBMP-4.9.so.1
> lib/libITKIOGDCM-4.9.so.1 lib/libITKIOGIPL-4.9.so.1
> lib/libITKIOImageBase-4.9.so.1 lib/libITKIOJPEG-4.9.so.1
> lib/libITKIOMeta-4.9.so.1 lib/libITKIONIFTI-4.9.so.1
> lib/libITKIONRRD-4.9.so.1 lib/libITKIOPNG-4.9.so.1
> lib/libITKIOTIFF-4.9.so.1 lib/libITKIOVTK-4.9.so.1 lib/libitksys-4.9.so.1
> lib/libITKVideoBridgeOpenCV-4.9.so.1
> /home/arnaud/install/lib/libopencv_videostab.so.2.4.9
> /home/arnaud/install/lib/libopencv_video.so.2.4.9
> /home/arnaud/install/lib/libopencv_ts.a
> /home/arnaud/install/lib/libopencv_superres.so.2.4.9
> /home/arnaud/install/lib/libopencv_stitching.so.2.4.9
> /home/arnaud/install/lib/libopencv_photo.so.2.4.9
> /home/arnaud/install/lib/libopencv_ocl.so.2.4.9
> /home/arnaud/install/lib/libopencv_objdetect.so.2.4.9
> /home/arnaud/install/lib/libopencv_nonfree.so.2.4.9
> /home/arnaud/install/lib/libopencv_ml.so.2.4.9
> /home/arnaud/install/lib/libopencv_legacy.so.2.4.9
> /home/arnaud/install/lib/libopencv_imgproc.so.2.4.9
> /home/arnaud/install/lib/libopencv_highgui.so.2.4.9
> /home/arnaud/install/lib/libopencv_gpu.so.2.4.9
> /home/arnaud/install/lib/libopencv_flann.so.2.4.9
> /home/arnaud/install/lib/libopencv_features2d.so.2.4.9
> /home/arnaud/install/lib/libopencv_core.so.2.4.9
> /home/arnaud/install/lib/libopencv_contrib.so.2.4.9
> /home/arnaud/install/lib/libopencv_calib3d.so.2.4.9
> lib/libitkdouble-conversion-4.9.so.1 lib/libITKIOBMP-4.9.so.1
> lib/libITKIOGDCM-4.9.so.1 lib/libITKIOGIPL-4.9.so.1
> lib/libITKIOImageBase-4.9.so.1 lib/libITKIOJPEG-4.9.so.1
> lib/libITKIOMeta-4.9.so.1 lib/libITKIONIFTI-4.9.so.1
> lib/libITKIONRRD-4.9.so.1 lib/libITKIOPNG-4.9.so.1
> lib/libITKIOTIFF-4.9.so.1 lib/libITKIOVTK-4.9.so.1 lib/libitksys-4.9.so.1
> -lpthread -lrt -ltbb /home/arnaud/install/lib/libopencv_nonfree.so.2.4.9
> /home/arnaud/install/lib/libopencv_ocl.so.2.4.9
> /home/arnaud/install/lib/libopencv_gpu.so.2.4.9
> /home/arnaud/install/lib/libopencv_photo.so.2.4.9
> /home/arnaud/install/lib/libopencv_objdetect.so.2.4.9
> /home/arnaud/install/lib/libopencv_legacy.so.2.4.9
> /home/arnaud/install/lib/libopencv_video.so.2.4.9
> /home/arnaud/install/lib/libopencv_ml.so.2.4.9
> /home/arnaud/install/lib/libopencv_calib3d.so.2.4.9
> /home/arnaud/install/lib/libopencv_features2d.so.2.4.9
> /home/arnaud/install/lib/libopencv_highgui.so.2.4.9
> /home/arnaud/install/lib/libopencv_imgproc.so.2.4.9
> /home/arnaud/install/lib/libopencv_flann.so.2.4.9
> /home/arnaud/install/lib/libopencv_core.so.2.4.9 lib/libITKVideoIO-4.9.so.1
> lib/libITKIOImageBase-4.9.so.1 lib/libITKVideoCore-4.9.so.1
> lib/libITKCommon-4.9.so.1 lib/libitkdouble-conversion-4.9.so.1
> lib/libitksys-4.9.so.1 lib/libITKVNLInstantiation-4.9.so.1
> lib/libitkvnl_algo-4.9.so.1 lib/libitkv3p_lsqr-4.9.so.1
> lib/libitkvnl-4.9.so.1 lib/libitkvcl-4.9.so.1 lib/libitkv3p_netlib-4.9.so.1
> -lm -lpthread -lm -ldl
> -Wl,-rpath,/home/arnaud/source/build-itk/lib:/home/arnaud/install/lib
> -Wl,-rpath-link,/home/arnaud/source/build-itk/lib && :
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoCaptureTest.cxx.o:
> In function `itk::OpenCVVideoIOFactory::New()':
> /home/arnaud/source/itk/Modules/Video/BridgeOpenCV/include/itkOpenCVVideoIOFactory.h:46:
> undefined reference to `itk::OpenCVVideoIOFactory::OpenCVVideoIOFactory()'
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOTest.cxx.o:
> In function `itk::OpenCVVideoIO::New()':
> /home/arnaud/source/itk/Modules/Video/BridgeOpenCV/include/itkOpenCVVideoIO.h:48:
> undefined reference to `itk::OpenCVVideoIO::OpenCVVideoIO()'
> Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOTest.cxx.o:
> In function `itk::ObjectFactory<itk::OpenCVVideoIO>::Create()':
> /home/arnaud/source/itk/Modules/Core/Common/include/itkObjectFactory.h:60:
> undefined reference to `typeinfo for itk::OpenCVVideoIO'
> /home/arnaud/source/itk/Modules/Core/Common/include/itkObjectFactory.h:62:
> undefined reference to `typeinfo for itk::OpenCVVideoIO'
> collect2: error: ld returned 1 exit status
> ninja: build stopped: subcommand failed.
>
>
> On Fri, Aug 14, 2015 at 6:24 PM, Arnaud Gelas <arnaudgelas at gmail.com>
> wrote:
>
>> I have already tried it, does not solve it... I will retry it with a
>> fresh build once again...
>>
>> On Fri, Aug 14, 2015 at 6:11 PM, Matt McCormick <
>> matt.mccormick at kitware.com> wrote:
>>
>>> Hi Arnaud,
>>>
>>> Yes, you are probably right.  The suggestion by Zach in this patch (to
>>> use DEPENDS) is promising:
>>>
>>>   http://review.source.kitware.com/#/c/20078/
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Fri, Aug 14, 2015 at 2:21 AM, Arnaud Gelas <arnaudgelas at gmail.com>
>>> wrote:
>>> > Hi Matt,
>>> >
>>> > It happened while directly building ITK with OpenCV 2.4.9, without any
>>> > superbuild...
>>> > Thanks for the patch, but that does not solve it...
>>> >
>>> > I wonder if it could have something to do with the new linking system
>>> (note
>>> > it uses COMPILE_DEPENDS) ?
>>> >
>>> > Thanks,
>>> > Arnaud
>>> >
>>> > On Thu, Aug 13, 2015 at 6:41 PM, Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hi Arnaud,
>>> >>
>>> >> Is this with building the examples with the superbuild?  I think I was
>>> >> getting this error, too.  Here is a patch that should address it:
>>> >>
>>> >>   http://review.source.kitware.com/#/c/20077/
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Thu, Aug 13, 2015 at 11:40 AM, Arnaud Gelas <arnaudgelas at gmail.com
>>> >
>>> >> wrote:
>>> >> > Hi all,
>>> >> >
>>> >> > I have just tried building ITK with BridgeOpenCV on Ubuntu 14.04
>>> and I
>>> >> > get
>>> >> > the following link error
>>> >> >
>>> >> > [2/2] Linking CXX executable bin/ITKVideoBridgeOpenCVHeaderTest1
>>> >> >
>>> >> > [...]
>>> >> >
>>> >> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>>> >> > 'itk::VideoIOBase::VideoIOBase()'
>>> >> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>>> >> > 'itk::VideoIOBase::~VideoIOBase()'
>>> >> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>>> >> > 'itk::VideoIOBase::PrintSelf(std::ostream&, itk::Indent) const'
>>> >> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>>> >> > 'typeinfo for itk::VideoIOBase'
>>> >> > collect2: error: ld returned 1 exit status
>>> >> >
>>> >> > I have checked these methods are implemented in
>>> itkVideoIOBase.cxx...
>>> >> >
>>> >> > Any idea?
>>> >> >
>>> >> > Thanks
>>> >> > Arnaud
>>> >> >
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>>>
>>
>>
>
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