[ITK-dev] HDF5 TransformIO broken with System HDF5

[Bradley Lowekamp]

Matt on Ubuntu 12 I have the following installed:

libhdf5-serial-1.8.4				install
libhdf5-serial-dev				install

And on RHEL I have:

hdf5-devel-1.8.5.patch1-7.el6.x86_64
hdf5-1.8.5.patch1-7.el6.x86_64

Brad

On May 7, 2014, at 1:31 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:

> Hi Brad,
> 
> On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages:
> 
> libhdf5-lam-dev
> libhdf5-mpi-dev
> libhdf5-mpich-dev
> libhdf5-openmpi-dev
> libhdf5-serial-dev
> 
> Which one are you using?
> 
> Thanks,
> Matt
> 
> On Wed, May 7, 2014 at 1:23 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
>> Hi Brad,
>> 
>> It looks like our code coverage for the HDF TransformIO is pretty good
>> [1], but I do not see a dashboard submission for those platforms that
>> use a system HDF5.  I will set one up on faraway.kitware and try to
>> reproduce the SimpleITK test failure.
>> 
>> Thanks,
>> Matt
>> 
>> [1] http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html
>> 
>> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>> Hello,
>>> 
>>> I wrote some SimpleITK tests to write out HDF5 transforms. They are failing when using ITK built with system HDF5. Specifically with RHEL5 and Ubuntu 12.04. I believe this is a critical issue as it's how ITK is being built for Linux distributions.
>>> 
>>> Looking through my ITK nightly build testing directory I didn't see any hdf5 files which leads me to believe this IO transform format may not be well tested.
>>> 
>>> I would greatly appreciate some assistance on this issue.
>>> 
>>> Here is my related SimpleITK issue.
>>> https://issues.itk.org/jira/browse/SIMPLEITK-535
>>> 
>>> Thanks,
>>> Brad
>>>