[ITK-dev] HDF5 TransformIO broken with System HDF5

[Matt McCormick]

Hi Brad,

On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages:

libhdf5-lam-dev
libhdf5-mpi-dev
libhdf5-mpich-dev
libhdf5-openmpi-dev
libhdf5-serial-dev

Which one are you using?

Thanks,
Matt

On Wed, May 7, 2014 at 1:23 PM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Hi Brad,
>
> It looks like our code coverage for the HDF TransformIO is pretty good
> [1], but I do not see a dashboard submission for those platforms that
> use a system HDF5.  I will set one up on faraway.kitware and try to
> reproduce the SimpleITK test failure.
>
> Thanks,
> Matt
>
> [1] http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html
>
> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>> Hello,
>>
>> I wrote some SimpleITK tests to write out HDF5 transforms. They are failing when using ITK built with system HDF5. Specifically with RHEL5 and Ubuntu 12.04. I believe this is a critical issue as it's how ITK is being built for Linux distributions.
>>
>> Looking through my ITK nightly build testing directory I didn't see any hdf5 files which leads me to believe this IO transform format may not be well tested.
>>
>> I would greatly appreciate some assistance on this issue.
>>
>> Here is my related SimpleITK issue.
>> https://issues.itk.org/jira/browse/SIMPLEITK-535
>>
>> Thanks,
>> Brad
>>