[Insight-developers] New Remote Module: SkullStrip

Jean-Christophe Fillion-Robin jchris.fillionr at kitware.com
Thu Jan 16 13:18:10 EST 2014


Hi Bill,

This is great.

Would it be possible to update the SkullStripper extension so that it
externally build the ITK remote module and use it ? Alternatively, you
could copy the files "itkStripTsImageFilter.*" specifying from which
revision of the remote module they are based of. Shell script to do so
should probably be generalized and made available ...

That would avoid code duplication and ease maintenance.

Thanks
Jc



On Thu, Jan 16, 2014 at 12:28 PM, Bill Lorensen <bill.lorensen at gmail.com>wrote:

> A Skull Stripping filter that removes face/skull from MRI data and
> creates a mask for the brain. This is a common preprocessing step for
> segmenting MRI brains and their contents.
>
> NOTE: This algorithm is also availiable as a Slicer extension:
> https://www.slicer.org/slicerWiki/index.php/Documentation/4.2/Extensions
>
> Following the process here:
> http://www.itk.org/Wiki/ITK/Policy_and_Procedures_for_Adding_Remote_Modules
>
> 1) A Skull-Stripping Filter for ITK Bauer S., Fejes T., Reyes M.
> http://www.insight-journal.org/browse/publication/859
>
> 2) Nightly Dashboard
>
> http://open.cdash.org/index.php?project=Insight&filtercount=2&showfilters=1&filtercombine=and&field1=site/string&compare1=63&value1=BillsAmazon&field2=buildname/string&compare2=63&value2=SkullStrip
>
> 3) Gerrit patch
> http://review.source.kitware.com/#/c/14054/
>
> 4) Notify list
>
> Bill
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
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