[ITK-dev] [ITK] ITK 4.7 Release Candidate 2 has been tagged!
Matt McCormick
matt.mccormick at kitware.com
Wed Dec 17 01:55:18 EST 2014
Here is the patch:
http://review.source.kitware.com/#/c/18511/
On Tue, Dec 16, 2014 at 3:05 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:
>
> Hi Brad,
>
> Thanks for investigating.
>
> I will look into throwing a warning if a read file has UNKNOWN units with
> non-unit spacing.
>
> Thanks,
> Matt
>
>
>
> On Tue, Dec 16, 2014 at 12:04 PM, Bradley Lowekamp <blowekamp at mail.nih.gov
> > wrote:
>>
>> Matt,
>>
>> Here is a the commit which provided insight:
>>
>>
>> https://github.com/InsightSoftwareConsortium/ITK/commit/d7bd945330746905c5e813275690477ff8981e7b
>>
>> The png files previously written by ITK have an UNKNOW sCal field. With
>> PNG 1.5, the value is ignored unlike the prior versions. ITK now writes the
>> the sCAL field as METER.
>>
>> My solution was to take a version of SimpleITK with ITK's PNG and just
>> read and re-write the files:
>>
>>
>> import SimpleITK as sitk
>> from glob import glob
>> fn = glob("*/*.png")
>> for f in fn:
>> img = sitk.ReadImage(f)
>> sitk.WriteImage(img, f)
>>
>>
>> I don't see how to improve this behavior. This line just works
>> differently with the new libpng [1].
>>
>> Brad
>>
>> On Dec 16, 2014, at 11:53 AM, Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>
>> Thanks!
>>
>> On Tue, Dec 16, 2014 at 8:53 AM, Bradley Lowekamp <blowekamp at mail.nih.gov
>> > wrote:
>>>
>>> Hello,
>>>
>>> Looking over SimpleITK's dashboard I have found an interesting failure:
>>>
>>>
>>> https://open.cdash.org/testSummary.php?project=40&name=BasicFilters.MorphologicalWatershedFromMarkersImageFilter&date=2014-12-16
>>>
>>> This system is using the system PNG library, and it appears to be
>>> failing because the spacing is different than expected. This is
>>> specifically a Redhat 7 system, and does have an ITK build with the system
>>> png library:
>>>
>>> https://open.cdash.org/buildSummary.php?buildid=3613486
>>>
>>> I'll look into this to see if the recent PNG sCAL changes are related.
>>>
>>> Brad
>>>
>>>
>>> On Dec 16, 2014, at 2:42 AM, Matt McCormick <matt.mccormick at kitware.com>
>>> wrote:
>>>
>>> On behalf of the Insight Toolkit community, we are proud to announce
>>> that ITK 4.7.0 release candidate 2 has been tagged and is available for
>>> testing! Please test the release candidate in the coming days for an
>>> imminent release.
>>>
>>> To obtain the source code,
>>>
>>> git clone http://itk.org/ITK.git
>>> cd ITK
>>> git checkout -q --detach v4.7rc02
>>>
>>> For more details, please see the Git documentation
>>> <http://www.itk.org/Wiki/ITK/Git> [1].
>>>
>>> A few highlights for this release: all ITK examples from the Software
>>> Guide, Wiki Examples, and SphinxExamples are new indexed and crossed
>>> linked in Doxygen <http://itk.org/Insight/Doxygen/html/examples.html>.
>>> So now when you go to your favorite filter or other object, say the
>>> ResampleImageFilter
>>> <http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html>,
>>> there is a large selection of examples in the examples sections. This
>>> should make it much easier to fine sample code on how to use an ITK class!
>>> TIFF IO has undergone a significant cleanup and speed-up, and now TIFF tags
>>> are read into the MetaDataDictionary. Three new Remote Modules are
>>> available, for gradient computation, DICOM IO, and QuadEdgeMesh filtering.
>>> Python wrapping, CMake configuration, and registration continue to improve.
>>> A new, experimental thread pool is available -- to enable set the
>>> ITK_USE_THREADPOOL or call
>>> itk::MultiThreader::SetGlobalDefaultUseThreadPool(true).
>>>
>>>
>>> Please test the release candidate and share your experiences on the
>>> mailing list, issue tracker, and Gerrit Code Review. Please help identify
>>> issues submitting an Experimental build to the dashboard
>>> <http://open.cdash.org/index.php?project=Insight> [2] with:
>>>
>>> ctest -M Experimental -T Configure -T Build -T Test -T Submit
>>>
>>> and notifying the mailing list. Testing your own applications against
>>> the RC is also appreciated.
>>>
>>>
>>> Congratulations and well done to the 29 contributors to this release. We
>>> would especially like to recognize the new contributors, Gert Wollny,
>>> Girish Mallya, Christopher Mullins, Umang B, David T. Chen, Danny Perry,
>>> Johan Andruejol, and Ismael Belghiti.
>>>
>>> The final release is scheduled for December 18th.
>>>
>>> [1] http://www.itk.org/Wiki/ITK/Git
>>>
>>> [2] http://itk.org/Insight/Doxygen/html/examples.html
>>>
>>> [3] http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html
>>>
>>> [2] http://open.cdash.org/index.php?project=Insight
>>>
>>>
>>>
>>> New Features
>>> ------------------
>>> * Documentation Improvements
>>> - Update Software Guide registration examples to ITKv4 framework
>>> - Wiki and Sphinx examples are indexed in Doxygen
>>> - Clean Software Guide dashboard build
>>>
>>> * Filtering Improvements
>>> - New Laplacian deformation filter’s for QuadEdgeMesh’s
>>> - IJ article: http://hdl.handle.net/10380/3410
>>> - FFTComplexToComplexImageFilter out of Review, Vnl, FFTW implementations
>>> - Faster recursive Gaussian on VectorImage
>>>
>>> * ImageIO improvements
>>> - PNG sCAL unit support
>>> - TIFF IO performance greatly improved
>>> - TIFF tags read into Image MetaDataDictionary
>>> - MetaIO updated
>>> - Better support for system GDCM
>>>
>>> * Infrastructure improvements
>>> - New method to erase a MetaDataDictionary entry
>>> - New global method to set physical space tolerance
>>> - New, experimental thread pool support
>>> - NumericTraits::Zero and ::One are deprecated in favor of
>>> ::ZeroValue() and ::OneValue()
>>> - VTK bridge modules only request required VTK modules
>>>
>>> * New Remote Modules
>>> - Higher Order Accurate Gradient
>>> - http://hdl.handle.net/10380/3231
>>> - IO Transform DCMTK
>>> - http://hdl.handle.net/10380/3468
>>> - Subdivision Quad Edge Mesh Filters
>>> - http://hdl.handle.net/10380/3307
>>>
>>> * Registration improvements
>>> - LandmarkBasedTransformInitializer supports BSplineTransform
>>> - Transverse inverse consistency increased
>>> - Automatic initialization of the transform center for multi-stage
>>> registrations
>>> - Sparse point B-spline field estimate
>>> - Mutual information faster, lower memory usage
>>>
>>> * Wrapping improvements
>>> - Wrapping now builds without type warnings
>>> - pygccxml bumped to 1.6.2
>>> - Latest GCCXML
>>> - CMake wrapping infrastructure cleanup
>>> - Build with Ninja CMake generator
>>> - New GetTypes() and GetTypesAsList() methods
>>> - ITK_WRAP_PYTHON is exposed in ITKConfig.cmake
>>>
>>>
>>> * Many style improvements -- ITK gets more stylish with every release!
>>>
>>> * Improved code coverage -- we are over 85%!
>>>
>>> * *Lots* of important bug fixes
>>>
>>> * And much more! See details in the log below.
>>>
>>> List of changes since v4.7-rc01
>>> --------------------------------------
>>>
>>> Ali Ghayoor (1):
>>> DOC: Revise the registration examples of ITKSoftwareGuide
>>>
>>> Arnaud Gelas (3):
>>> ENH: Adding SubdivisionQuadEdgeMeshFilters to ITK as remote module
>>> COMP: address clang -Winconsistent-missing-override in
>>> ITKQuadEdgeMesh
>>> COMP: fix warnings on dashboard for Subdivision remote module
>>>
>>> Bradley Lowekamp (5):
>>> BUG: Fix segfault when setting displacement field as null
>>> BUG: Don't enable SSE rounding with OSX and gccxml
>>> BUG: Add portable access to Tiff field name
>>> BUG: Fix conversion compilation error
>>> BUG: Rename remote module FDFImageIO -> IOFDF
>>>
>>> Christopher Mullins (6):
>>> STYLE: Fix line length in OpenJPEG license for 80 character.
>>> DOC: Finish the ImageLinearIteratorWithIndex example.
>>> DOC: Text and picture problems, book2
>>> BUG: Fix text in margin issues
>>> DOC: Edits for the beginning of chapter 5, Statistics
>>> DOC: Fix empty code block.
>>>
>>> Cory Quammen (1):
>>> COMP: Avoid including VTK_USE_FILE within ITK
>>>
>>> Kent Williams (1):
>>> ENH: Add test to exercise issue with Transform::GetInverse
>>>
>>> Matthew McCormick (7):
>>> BUG: Register AzimuthElevationToCartesianTransform to factories.
>>> DOC: Update texture feature class references.
>>> BUG: Fix texture feature correlation computation for constant image.
>>> STYLE: Put ImageToImageFilterCommon in its own file.
>>> BUG: Wrap ImageToImageFilterCommon.
>>> STYLE: Put ImageSourceCommon in its own file.
>>> COMP: Add missing itkImageRegionSplitterBase to ImageSourceCommon.
>>>
>>> Michka Popoff (1):
>>> ENH: Add CVD and CVF types to VectorIndexSelectionCastImageFilter
>>> wrappings
>>>
>>> Ziv Yaniv (1):
>>> COMP: fixed warnings from gcc4.1.2, made implicit casts explicit
>>>
>>>
>>> List of changes since v4.6.0
>>> --------------------------------------
>>>
>>> Alexander Schmidt-Richberg (1):
>>> ENH: Updated Remote Module VariationalRegistration to new git tag
>>>
>>> Ali Ghayoor (10):
>>> ENH: Make ITKv4 compatible with ITKSoftwareGuide
>>> ENH: Add GetCurrentStepLength to RegularStepGradDescentOptv4
>>> ENH: Convert three ImageRegistration Examples to ITKv4
>>> ENH: Add multi-Res and multistage registration Examples to ITKv4
>>> ENH: Convert DeformableReg examples to ITKv4 reg framework
>>> BUG: Expand a test to reflect multi-metric registration bug
>>> BUG: Fix multi metric point sampling bug in
>>> ImageRegistrationMethodv4
>>> ENH: Add direct initialization to SyN registration
>>> ENH: Direct initialization of SyN by restoring the state
>>> ENH: LandmarkBasedTransformInitializer supports BSplineTransformType
>>>
>>> Arnaud Gelas (15):
>>> COMP: use find_package(VTK COMPONENTS) for LevelSetsv4Visualization
>>> ENH: Importing Laplacian Deformation for QuadEdgeMesh
>>> DOC: Add more explanation about SmoothingQuadEdgeMeshFilter's usage
>>> ENH: SmoothingQuadEdgeMeshFilter::SetCoefficientMethod calls
>>> Modified()
>>> ENH: Add progress report in itk::SmoothingQuadEdgeMeshFilter
>>> BUG: fix gdcm version in GDCMImageIO.
>>> COMP: missing cast when calling gdcm::DataElement::SetByteValue
>>> COMP: missing cast when calling gdcm::DataElement::SetByteValue
>>> ENH: increase LaplacianDeformation code coverage
>>> STYLE: use typedef rather than inheritance
>>> BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is
>>> false
>>> BUG: split include directories into appropriate cmake variables HDF5
>>> BUG: missing gdcm libraries when using system GDCM
>>> DOC: fix doxygen documentaiton for
>>> itk::LaplacianDeformationQuadEdgeMeshFilter
>>> ENH: Add one method to erase a tag into MetaDataDictionary
>>>
>>> Bill Lorensen (5):
>>> ENH: Specify required VTK modules
>>> COMP: Wiki examples require additional vtk modules
>>> ENH: Modify WikiExamples remote config
>>> COMP: Bad test signature
>>> COMP: Update tag for wiki examples
>>>
>>> Brad King (6):
>>> COMP: Fix vxl_config_macros usage of CMake check macros
>>> ENH: Use if(DEFINED) to simplify conditions
>>> COMP: Fix vxl_config_macros checks broken by refactoring
>>> COMP: Fix one more vxl_config_macros check broken by refactoring
>>> BUG: Fix itk_module_config for repeated calls
>>> BUG: Fix itk_module_config for repeated calls
>>>
>>> Bradley Lowekamp (52):
>>> ENH: Adding License file from upstream MetaIO
>>> ENH: Adding script to update MetaIO from upstream
>>> ENH: Remove ITK MetaIO to prepare for upstream import
>>> PERF: Remove dynamically allocated temporary in evaluate method
>>> COMP: Fix variable type for Set/Get macros
>>> BUG: Implement ITK Style Singleton design pattern
>>> ENH: Add no throw exception specification for UnRegister methods
>>> COMP: Must specify order as "noexcept override"
>>> BUG: Add GetInverse for IdentityTransform
>>> ENH: Adding SetIdentity method to base DisplacementField class
>>> BUG: Remove unused redefinition of NULL
>>> BUG: Don't print to std::cout in PrintSelf
>>> ENH: Prefer the PrintSelfObjectMacro for printing nested objects
>>> BUG: Use METER of sCAL scale unit
>>> BUG: Use PNG_SCALE_METER for PNG sCAL unit
>>> BUG: Use METER of sCAL scale unit
>>> BUG: Use PNG_SCALE_METER for PNG sCAL unit
>>> COMP: Fix signed to unsigned int comparison
>>> BUG: Fix overflows computing size of read tiff image
>>> ENH: Extract TiffReaderInternal to separate file
>>> ENH: Refactor ReadTwoSamplePerPixelImage into template function
>>> ENH: Refactor GenericReadImage into template function
>>> BUG: Remove Zeiss 2-channel support code in TIFFImageIO ( and
>>> LSMImageIO )
>>> ENH: Refactor method to convert RGBA image to output buffer
>>> ENH: Refactor duplicated code to read a page
>>> BUG: Fix right oriented tiff images
>>> BUG: Remove dead separated plannar code, add test
>>> STYLE: Fix minor kwstyle defects in test and test results
>>> BUG: Use array delete operator for array new allocations
>>> ENH: add arbitrary TIFF TAGs to meta-data dictionary
>>> ENH: Reduce code duplicate in TIFFImageIO::ReadCurrentPage
>>> BUG: Address Coverity warning about null pointer dereferences
>>> ENH: Remove support for TIFF tile as 3D and dead code
>>> ENH: RGBA read images should stay unchanged.
>>> BUG: Override method to MakeOutput by name
>>> ENH: Refactor per pixel conversion function to per scan-line method
>>> PERF: Refactor color table lookup
>>> BUG: Adding missing parentheses around boolean expression
>>> ENH: adding TIFFImageIO test for RGB palette images
>>> PERF: Improve recursive Gaussian perfromance with VectorImages
>>> ENH: Query libtiff to determine compression support
>>> BUG: Support TIFF tiled image with TIFFReadRGBAImage
>>> BUG: Use SizeValueType for length of scanline
>>> PERF: Store causal results directly in output buffers
>>> COMP: Add explicit conversion to const char
>>> COMP: Explicitly add override to GetNameOfClass method
>>> COMP: Address internal segmentation fault with Intel compiler
>>> ENH: Adding method to set global physical space tolerance
>>> COMP: Explicitly add override to GetNameOfClass method
>>> BUG: Add new TypeMacro for non-overloaded classes
>>> BUG: Fix obscure race condition on access thread pool initialization
>>> BUG: Updating FDFImageIO remote module
>>>
>>> Christopher Mullins (15):
>>> COMP: Allows latex to compile for ITKSoftwareGuide
>>> COMP: Allows latex to compile for ITKSoftwareGuide
>>> COMP: Wrap MeshBase templates
>>> COMP: Wrap MeshBase templates
>>> COMP: Fix warning in BlockMatchingImageFilter
>>> STYLE: Line lengths in examples should be no longer than 80 chars.
>>> COMP: Wrap the remaining MeshBase and MeshToMeshFilter types.
>>> COMP: Fix LaTeX warnings.
>>> STYLE: Fix formatting/punctuation errors.
>>> STYLE: Formatting and punctuation fixes.
>>> DOC: Edits for Book 2 Chapter 1 documentation in the Examples.
>>> DOC: Edits for book 2 chapter 2.
>>> DOC: More chapter 2 edits
>>> DOC: Book 2 Chapter 3 edits (part 1)
>>> DOC: book 2 chapter 4 Segmentation edits
>>>
>>> Danny Perry (2):
>>> BUG: adding test for vnl_sparse_matrix::mult()
>>> BUG: size of q buffer should actually be (this->rows())*pcols.
>>>
>>> David T. Chen (1):
>>> DOC: Fixed HistogramThresholdImageFitler
>>>
>>> Dirk Padfield (1):
>>> BUG: Corrected processing of last sigma
>>>
>>> GCC-XML Upstream (1):
>>> ENH: pygccxml v1.6.2 (reduced)
>>>
>>> Gert Wollny (1):
>>> COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
>>>
>>> Girish Mallya (1):
>>> BUG: Tests added for BinaryImageToLabelMapFilter for single-row
>>> images.
>>>
>>> Hans Johnson (24):
>>> COMP: Add tolerance for comparing floating point
>>> PERF: Remove non-threadable algorithm components
>>> COMP: Add tolerance for comparing floating point
>>> PERF: Remove non-threadable algorithm components
>>> PERF: Remove large foot print of PDF derivatives.
>>> PERF: Revert Remove large foot print of PDF derivatives.
>>> STYLE: Test against almost equal for floating point values
>>> STYLE: Non-exact floating point testing
>>> PERF: Distribute initialization per thread buffers
>>> ENH: Remove unnecessary mutable qualifier.
>>> STYLE: Remove comment with no meaning.
>>> ENH: Moved accumlator logic to main MI class
>>> ENH: Allow staggering of accumulations per thread.
>>> PERF: Zero reset thread buffers during finalize
>>> BUG: Syntax error in comment
>>> PERF: Add non-blocking mutex locking.
>>> ENH: Use TryLock minimize thread stalls
>>> BUG: ThreadedIndexedContainerPartitioner is inclusive
>>> STYLE: Remove include_regular_expression from Examples
>>> BUG: Demonstrate Inv(Inv(T)) != T
>>> BUG: Ensure Inv(Inv(T)) == T for transforms
>>> COMP: Valgrind detects uninitialized memory read
>>> COMP: Missing required base class API component
>>> ENH: Expand interface for selecting threadpool
>>>
>>> Ismael Belghiti (1):
>>> DOC: Spelling Error in PatchBasedDenoisingBaseImageFilter
>>>
>>> Jim Miller (1):
>>> STYLE: Removing what appears to be a temporary file
>>>
>>> Johan Andruejol (1):
>>> ENH: Fix normalization for null vectors and return the norm
>>>
>>> Jon Haitz Legarreta (1):
>>> ENH: New test for itkLabelShapeOpeningImageFilter
>>>
>>> Kent Williams (9):
>>> COMP: use find_package(VTK COMPONENTS) to specify just needed VTK
>>> Components
>>> BUG: ImageSources/test/CMakeLists.txt incorrect library var
>>> reference
>>> COMP: Fix coverity defects related to RegistrationV4 examples
>>> COMP: silence warning of vnl_vector_fixed_ref::assert_size
>>> COMP: Fix various Coverity warnings
>>> COMP: Fix a typo in an error message print statement.
>>> COMP: itk::Command-derived class used pointless dynamic_cast.
>>> PERF: Don't recompute InternalInverse repeatedly
>>> COMP: Correct orientation/spacing for Philips MultiFrame
>>>
>>> Mark Hiner (2):
>>> ENH: Update SCIFIO remote module hash
>>> BUG: Fix duplicate variables in Windows
>>>
>>> Matthew McCormick (105):
>>> DOC: Fix itkSetGetDecoratedInputMacro Doxygen macro.
>>> ENH: Move FFTComplexToComplexImageFilter out of Review.
>>> ENH: Add VnlComplexToComplexFFTImageFilter.
>>> BUG: Use fixed seed for Vnl FFT tests for repeatibility.
>>> ENH: Bump CMakeLists.txt version to 4.7.0.
>>> BUG: ArchiveTestingData.py future imports must occur at the
>>> beginning.
>>> BUG: Do not run vnl_test_na with broken libc++.
>>> DOC: Remove Image2.cxx reference from Book 2.
>>> DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
>>> DOC: Remove references to Book 1 sections from Book 2.
>>> DOC: Make BinaryThresholdImageFilter not floating.
>>> DOC: Fix Software Guide figure caption for FlipImageFilter.
>>> DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
>>> DOC: Remove duplicate figure in
>>> LaplacianRecursiveGaussianImageFilter2.cxx.
>>> DOC: ImageRandomConstIteratorWithIndex table reference.
>>> DOC: Fix Software Guide page overruns in
>>> IterativeClosestPoint{1,2}.cxx.
>>> DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
>>> BUG: Uninitialized m_TransformDirection in
>>> ComplexToComplexFFTImageFilter.
>>> BUG: Fix offset[2] in PointSetToSpatialObjectDemonsRegistrationTest.
>>> STYLE: Fix style in VoronoiDiagram2D.
>>> BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
>>> BUG: Bump GCCXML to 2014-08-06.
>>> BUG: Remove unused m_{SplitEpsilon,SigmoidPrimeOffset}.
>>> BUG: Fix Win MultiThreader check for successful process creation.
>>> BUG: Fix VTKPolyDataMeshIO writing for 2D second rank tensor.
>>> COMP: Fix ImageRegistration8RegisteredSlice.png baseline name.
>>> DOC: itk::statistics -> itk::Statistics.
>>> COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
>>> BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
>>> COMP: Improve const correctness of
>>> GradientRecursiveGaussianImageFilter.
>>> BUG: Call clear instead of empty on PatchBasedDenoising
>>> EmptyCaches().
>>> BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
>>> COMP: ThreadJob NULL not defined.
>>> BUG: Fix alpha assignment for RGBA TIFF.
>>> COMP: Remove unused typedefs in LevelSetsv4Visualization.
>>> COMP: Remove unused typedef's in VtkGlue.
>>> ENH: Mark BSplineWarping2Test as RUNS_LONG.
>>> BUG: Fix Nifti IO read with large images.
>>> COMP: Remove call for non-existent variable in Nifti debugging.
>>> BUG: Close the file on Read and Write in HDF5TransformIO.
>>> BUG: Remove InsightLegacy test code from TransformHDF5Test.
>>> ENH: Add {Set,Get}TransformIO for TransformFile{Reader,Writer}.
>>> STYLE: Use SeriesUIDContainerType and FileNamesContainerType
>>> ENH: Allow specification of orthogonality tolerance in rigid
>>> transforms.
>>> BUG: TransformFileReader does not clear its TransformList.
>>> BUG: Prevent dangling pointer in HDF5TransformIO.
>>> COMP: Do not use _stat64 with MinGW-32.
>>> BUG: Improve thread-safety and performance of
>>> PCAShapeSignedDistanceFunction.
>>> DOC: itk::statistics -> itk::Statistics.
>>> DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
>>> DOC: Fix Software Guide page overruns in
>>> IterativeClosestPoint{1,2}.cxx.
>>> COMP: Address LaplacianDeformation Doxygen warnings.
>>> BUG: TransformFileReader does not clear its TransformList.
>>> BUG: Prevent dangling pointer in HDF5TransformIO.
>>> COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
>>> BUG: Do not return SmartPointers in
>>> TimeVaryingVelocityFieldTransform
>>> COMP: Do not wrap the FixedArray of Image SmartPointer's.
>>> COMP: Add missing wrapping for TransformIOBaseTemplate.
>>> COMP: Mark DeformableRegistration6Test as RUNS_LONG.
>>> STYLE: Improve style in BinaryImageToLabelMapFilter.
>>> BUG: Fix BinaryImageToLabelMapFilter on 1D image.
>>> ENH: Improve precision of the joint PDF sum
>>> BUG: Fix BinShrinkImageFilter for different input/output image
>>> types.
>>> COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
>>> BUG: Use -py3 when building wrapping for Python 3.
>>> COMP: Add missing wrapping for TransformIOBaseTemplate.
>>> DOC: Improve ImageRegistration4 grammar.
>>> ENH: Add IOTransformDCMTK Remote module.
>>> BUG: gdcm::StringFilter recognizes backslash delimiter.
>>> DOC: Add migration guide for GDCM Rescale slope intercept apply on
>>> write.
>>> COMP: Remove unused typedef's in GPU code.
>>> STYLE: Improve style of HoughTransform2DLinesImageFilter example.
>>> COMP: Use ConceptChecking for IterativeInverse dimension check.
>>> COMP: Wrap TransformIOBaseTemplate for const SmartPointer.
>>> COMP: Add warning exceptions for third party pcre, swig, gccxml.
>>> ENH: Bump ITK version to 4.6.1.
>>> BUG: Add missing ITK_OVERRIDE to ITKImageeSources module.
>>> BUG: Remove GaussianImageSource members shadowing
>>> GenerateImageSource.
>>> STYLE: Style fixes to ITKImageSources module.
>>> BUG: GaussianSpatialFunction and GaborImageSource use
>>> SpacePrecisionType.
>>> BUG: Do not perform itk_download_attempt_check when not building
>>> ITK.
>>> DOC: Update GDCMImageIO rescale slope intercept doc.
>>> BUG: Only register requestion IO COMPONENT modules.
>>> BUG: Fix wrapping .i, .idx CMake dependencies.
>>> COMP: Add VTK Python module when wrapping ITKVtkGlue.
>>> STYLE: Remove NULL definition in itkVoronoiDiagram2DGenerator.
>>> STYLE: VoronoiDiagram2DGenerator defines a VoronoiDiagramType
>>> typedef.
>>> COMP: Add missing VTK module dependency for
>>> LevelSetsv4Visualization.
>>> BUG: By default, do not create any fixed parameters.
>>> STYLE: Remove trivial method comments in itkTransform.hxx.
>>> BUG: PolylineMask Filter's GenerateData is protected / virtual.
>>> ENH: Add HigherOrderAccurateGradient Module.
>>> BUG: Use input RequestedRegion Index in SliceBySliceImageFilter
>>> internal.
>>> COMP: Remove extra semi-colon, variable scope in DCMTKFileReader.
>>> STYLE: Style fixes for Transform classes.
>>> DOC: Increase Doxygen LOOKUP_CACHE_SIZE.
>>> BUG: MatrixOffsetTransformBase::GetFixedParameters not thread safe.
>>> DOC: Index Wiki examples with Doxygen.
>>> COMP: Bump SphinxExamples remote module.
>>> DOC: Index Sphinx examples in Doxygen.
>>> COMP: Remove old java examples.
>>> COMP: Remove duplicate DiffusionTensor3DReconstruction example
>>> reference.
>>> COMP: Address GradientAnisotropicDiffusionImageFilter example
>>> settings.
>>> COMP: Bump Sphinx Examples remote.
>>> COMP: Bump WikiExamples remote.
>>>
>>> MetaIO Maintainers (1):
>>> MetaIO (reduced)
>>>
>>> Michka Popoff (40):
>>> ENH: Fixes for python 3 support
>>> BUG: Add VTK_VERSION for older VTK versions
>>> BUG: Improve SWIG version check
>>> COMP: Add wrapping for ThreadPool and ThreadJob
>>> COMP: Remove unimplemented DestroyPool method
>>> COMP: Fix itkVnlComplexToComplexFFTImageFilter wrapping
>>> COMP: Do not hide pygccxml warnings
>>> ENH: Update links in readme file
>>> BUG: Improve SWIG version check
>>> BUG: Add VTK_VERSION for older VTK versions
>>> STYLE: Remove trailing whitespaces
>>> STYLE: Set ITK_USE_SYTEM_ZLIB and ITK_USE_SYTEM_SZIP
>>> BUG: Fix memory leak in MetaImageIO after exception
>>> ENH: Add script to update pygccxml from upstream
>>> BUG: Update VTK minimum version (for release)
>>> BUG: Fix memory leak in MetaImageIO after exception
>>> ENH: Remove Sun OS compatibility for the wrappings
>>> COMP: Fix for conversion to non-pointer like type warning
>>> STYLE: LabelObject style
>>> DOC: Remove broken link from LabelObject class description
>>> ENH: Do not setup the python tests if not asked
>>> ENH: Add new GetTypes() and GetTypesAsList() methods to the
>>> template class
>>> COMP: Fix CMP0054 warnings in wrappings
>>> STYLE: Remove old cmake < 2.8.4 specific code
>>> STYLE: Remove old cmake < 2.8.5 specific code
>>> ENH: Update to PCRE 8.36
>>> COMP: Refactor Wrapping setup and fix legacy warnings
>>> ENH: Add wrapping configuration to ITKConfig.cmake
>>> STYLE: Some minor code cleanup in the wrapping setup
>>> DOC: Fix typo in RelabelComponentImageFilter
>>> ENH: Deprecate VectorResampleImageFilter
>>> DOC: Add migration guide for ::Zero and ::One
>>> ENH: Deprecate ::Zero and ::One
>>> ENH: Add option to disable sorting by size in
>>> itkRelabelComponentImageFilter
>>> ENH: Add Vector and RGB wrapping to linear interpolator
>>> STYLE: Remove SORT macro in wrappings
>>> COMP: Fix warning for InterpolateImageFunction wrapping
>>> COMP: Add a check for Blocks in GPU module
>>> COMP: Bump SCIFIO to fix test build warnings
>>> COMP: Fix wrapping of itkImageFunctionBase
>>>
>>> Nick Tustison (7):
>>> BUG: Need to explicitly specify spline order.
>>> ENH: Initializing the transform center.
>>> BUG: Need to check the dynamic cast before any calls.
>>> ENH: Adding modifications for point set metrics.
>>> BUG: Need to specify TInternalComputationValueType for default
>>> metric.
>>> ENH: Adding sparse points to B-spline field estimate.
>>> BUG: Uninitialized variables.
>>>
>>> Richard Beare (1):
>>> ENH: Include TIFF tags in the MetaDataDictionary
>>>
>>> Taylor Braun-Jones (1):
>>> BUG: Fix SliceBySliceImageFilter doesn't propagate information
>>> internally
>>>
>>> Umang B (1):
>>> ENH: Use thread pool to dispatch multithreading tasks
>>>
>>> Vivien Delmon (2):
>>> BUG: ExtractImageFilter::CollapseToSubMatrix fix
>>> ENH: Add a test on extracted directions in CollapseToSubMatrix mode
>>>
>>> Vladimir S. FONOV (1):
>>> BUG: Fixing incorrect MINC style inverse transform
>>>
>>>
>>> -----------------------------------------------------
>>> Errors or omissions? Please fix them here:
>>>
>>>
>>> https://docs.google.com/document/d/1V0zNgFrm_GyF1jOC00fMq-7VBXk4hHmHL62qByfeKP4/edit?usp=sharing
>>>
>>>
>>>
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>>>
>>>
>>>
>>
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