[ITK-dev] [ITK] ITK 4.7 Release Candidate 2 has been tagged!
Matt McCormick
matt.mccormick at kitware.com
Tue Dec 16 15:05:39 EST 2014
Hi Brad,
Thanks for investigating.
I will look into throwing a warning if a read file has UNKNOWN units with
non-unit spacing.
Thanks,
Matt
On Tue, Dec 16, 2014 at 12:04 PM, Bradley Lowekamp <blowekamp at mail.nih.gov>
wrote:
>
> Matt,
>
> Here is a the commit which provided insight:
>
>
> https://github.com/InsightSoftwareConsortium/ITK/commit/d7bd945330746905c5e813275690477ff8981e7b
>
> The png files previously written by ITK have an UNKNOW sCal field. With
> PNG 1.5, the value is ignored unlike the prior versions. ITK now writes the
> the sCAL field as METER.
>
> My solution was to take a version of SimpleITK with ITK's PNG and just
> read and re-write the files:
>
>
> import SimpleITK as sitk
> from glob import glob
> fn = glob("*/*.png")
> for f in fn:
> img = sitk.ReadImage(f)
> sitk.WriteImage(img, f)
>
>
> I don't see how to improve this behavior. This line just works differently
> with the new libpng [1].
>
> Brad
>
> On Dec 16, 2014, at 11:53 AM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
> Thanks!
>
> On Tue, Dec 16, 2014 at 8:53 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
> wrote:
>>
>> Hello,
>>
>> Looking over SimpleITK's dashboard I have found an interesting failure:
>>
>>
>> https://open.cdash.org/testSummary.php?project=40&name=BasicFilters.MorphologicalWatershedFromMarkersImageFilter&date=2014-12-16
>>
>> This system is using the system PNG library, and it appears to be failing
>> because the spacing is different than expected. This is specifically a
>> Redhat 7 system, and does have an ITK build with the system png library:
>>
>> https://open.cdash.org/buildSummary.php?buildid=3613486
>>
>> I'll look into this to see if the recent PNG sCAL changes are related.
>>
>> Brad
>>
>>
>> On Dec 16, 2014, at 2:42 AM, Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>
>> On behalf of the Insight Toolkit community, we are proud to announce that
>> ITK 4.7.0 release candidate 2 has been tagged and is available for testing!
>> Please test the release candidate in the coming days for an imminent
>> release.
>>
>> To obtain the source code,
>>
>> git clone http://itk.org/ITK.git
>> cd ITK
>> git checkout -q --detach v4.7rc02
>>
>> For more details, please see the Git documentation
>> <http://www.itk.org/Wiki/ITK/Git> [1].
>>
>> A few highlights for this release: all ITK examples from the Software
>> Guide, Wiki Examples, and SphinxExamples are new indexed and crossed
>> linked in Doxygen <http://itk.org/Insight/Doxygen/html/examples.html>.
>> So now when you go to your favorite filter or other object, say the
>> ResampleImageFilter
>> <http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html>,
>> there is a large selection of examples in the examples sections. This
>> should make it much easier to fine sample code on how to use an ITK class!
>> TIFF IO has undergone a significant cleanup and speed-up, and now TIFF tags
>> are read into the MetaDataDictionary. Three new Remote Modules are
>> available, for gradient computation, DICOM IO, and QuadEdgeMesh filtering.
>> Python wrapping, CMake configuration, and registration continue to improve.
>> A new, experimental thread pool is available -- to enable set the
>> ITK_USE_THREADPOOL or call
>> itk::MultiThreader::SetGlobalDefaultUseThreadPool(true).
>>
>>
>> Please test the release candidate and share your experiences on the
>> mailing list, issue tracker, and Gerrit Code Review. Please help identify
>> issues submitting an Experimental build to the dashboard
>> <http://open.cdash.org/index.php?project=Insight> [2] with:
>>
>> ctest -M Experimental -T Configure -T Build -T Test -T Submit
>>
>> and notifying the mailing list. Testing your own applications against
>> the RC is also appreciated.
>>
>>
>> Congratulations and well done to the 29 contributors to this release. We
>> would especially like to recognize the new contributors, Gert Wollny,
>> Girish Mallya, Christopher Mullins, Umang B, David T. Chen, Danny Perry,
>> Johan Andruejol, and Ismael Belghiti.
>>
>> The final release is scheduled for December 18th.
>>
>> [1] http://www.itk.org/Wiki/ITK/Git
>>
>> [2] http://itk.org/Insight/Doxygen/html/examples.html
>>
>> [3] http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html
>>
>> [2] http://open.cdash.org/index.php?project=Insight
>>
>>
>>
>> New Features
>> ------------------
>> * Documentation Improvements
>> - Update Software Guide registration examples to ITKv4 framework
>> - Wiki and Sphinx examples are indexed in Doxygen
>> - Clean Software Guide dashboard build
>>
>> * Filtering Improvements
>> - New Laplacian deformation filter’s for QuadEdgeMesh’s
>> - IJ article: http://hdl.handle.net/10380/3410
>> - FFTComplexToComplexImageFilter out of Review, Vnl, FFTW implementations
>> - Faster recursive Gaussian on VectorImage
>>
>> * ImageIO improvements
>> - PNG sCAL unit support
>> - TIFF IO performance greatly improved
>> - TIFF tags read into Image MetaDataDictionary
>> - MetaIO updated
>> - Better support for system GDCM
>>
>> * Infrastructure improvements
>> - New method to erase a MetaDataDictionary entry
>> - New global method to set physical space tolerance
>> - New, experimental thread pool support
>> - NumericTraits::Zero and ::One are deprecated in favor of ::ZeroValue()
>> and ::OneValue()
>> - VTK bridge modules only request required VTK modules
>>
>> * New Remote Modules
>> - Higher Order Accurate Gradient
>> - http://hdl.handle.net/10380/3231
>> - IO Transform DCMTK
>> - http://hdl.handle.net/10380/3468
>> - Subdivision Quad Edge Mesh Filters
>> - http://hdl.handle.net/10380/3307
>>
>> * Registration improvements
>> - LandmarkBasedTransformInitializer supports BSplineTransform
>> - Transverse inverse consistency increased
>> - Automatic initialization of the transform center for multi-stage
>> registrations
>> - Sparse point B-spline field estimate
>> - Mutual information faster, lower memory usage
>>
>> * Wrapping improvements
>> - Wrapping now builds without type warnings
>> - pygccxml bumped to 1.6.2
>> - Latest GCCXML
>> - CMake wrapping infrastructure cleanup
>> - Build with Ninja CMake generator
>> - New GetTypes() and GetTypesAsList() methods
>> - ITK_WRAP_PYTHON is exposed in ITKConfig.cmake
>>
>>
>> * Many style improvements -- ITK gets more stylish with every release!
>>
>> * Improved code coverage -- we are over 85%!
>>
>> * *Lots* of important bug fixes
>>
>> * And much more! See details in the log below.
>>
>> List of changes since v4.7-rc01
>> --------------------------------------
>>
>> Ali Ghayoor (1):
>> DOC: Revise the registration examples of ITKSoftwareGuide
>>
>> Arnaud Gelas (3):
>> ENH: Adding SubdivisionQuadEdgeMeshFilters to ITK as remote module
>> COMP: address clang -Winconsistent-missing-override in
>> ITKQuadEdgeMesh
>> COMP: fix warnings on dashboard for Subdivision remote module
>>
>> Bradley Lowekamp (5):
>> BUG: Fix segfault when setting displacement field as null
>> BUG: Don't enable SSE rounding with OSX and gccxml
>> BUG: Add portable access to Tiff field name
>> BUG: Fix conversion compilation error
>> BUG: Rename remote module FDFImageIO -> IOFDF
>>
>> Christopher Mullins (6):
>> STYLE: Fix line length in OpenJPEG license for 80 character.
>> DOC: Finish the ImageLinearIteratorWithIndex example.
>> DOC: Text and picture problems, book2
>> BUG: Fix text in margin issues
>> DOC: Edits for the beginning of chapter 5, Statistics
>> DOC: Fix empty code block.
>>
>> Cory Quammen (1):
>> COMP: Avoid including VTK_USE_FILE within ITK
>>
>> Kent Williams (1):
>> ENH: Add test to exercise issue with Transform::GetInverse
>>
>> Matthew McCormick (7):
>> BUG: Register AzimuthElevationToCartesianTransform to factories.
>> DOC: Update texture feature class references.
>> BUG: Fix texture feature correlation computation for constant image.
>> STYLE: Put ImageToImageFilterCommon in its own file.
>> BUG: Wrap ImageToImageFilterCommon.
>> STYLE: Put ImageSourceCommon in its own file.
>> COMP: Add missing itkImageRegionSplitterBase to ImageSourceCommon.
>>
>> Michka Popoff (1):
>> ENH: Add CVD and CVF types to VectorIndexSelectionCastImageFilter
>> wrappings
>>
>> Ziv Yaniv (1):
>> COMP: fixed warnings from gcc4.1.2, made implicit casts explicit
>>
>>
>> List of changes since v4.6.0
>> --------------------------------------
>>
>> Alexander Schmidt-Richberg (1):
>> ENH: Updated Remote Module VariationalRegistration to new git tag
>>
>> Ali Ghayoor (10):
>> ENH: Make ITKv4 compatible with ITKSoftwareGuide
>> ENH: Add GetCurrentStepLength to RegularStepGradDescentOptv4
>> ENH: Convert three ImageRegistration Examples to ITKv4
>> ENH: Add multi-Res and multistage registration Examples to ITKv4
>> ENH: Convert DeformableReg examples to ITKv4 reg framework
>> BUG: Expand a test to reflect multi-metric registration bug
>> BUG: Fix multi metric point sampling bug in ImageRegistrationMethodv4
>> ENH: Add direct initialization to SyN registration
>> ENH: Direct initialization of SyN by restoring the state
>> ENH: LandmarkBasedTransformInitializer supports BSplineTransformType
>>
>> Arnaud Gelas (15):
>> COMP: use find_package(VTK COMPONENTS) for LevelSetsv4Visualization
>> ENH: Importing Laplacian Deformation for QuadEdgeMesh
>> DOC: Add more explanation about SmoothingQuadEdgeMeshFilter's usage
>> ENH: SmoothingQuadEdgeMeshFilter::SetCoefficientMethod calls
>> Modified()
>> ENH: Add progress report in itk::SmoothingQuadEdgeMeshFilter
>> BUG: fix gdcm version in GDCMImageIO.
>> COMP: missing cast when calling gdcm::DataElement::SetByteValue
>> COMP: missing cast when calling gdcm::DataElement::SetByteValue
>> ENH: increase LaplacianDeformation code coverage
>> STYLE: use typedef rather than inheritance
>> BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is
>> false
>> BUG: split include directories into appropriate cmake variables HDF5
>> BUG: missing gdcm libraries when using system GDCM
>> DOC: fix doxygen documentaiton for
>> itk::LaplacianDeformationQuadEdgeMeshFilter
>> ENH: Add one method to erase a tag into MetaDataDictionary
>>
>> Bill Lorensen (5):
>> ENH: Specify required VTK modules
>> COMP: Wiki examples require additional vtk modules
>> ENH: Modify WikiExamples remote config
>> COMP: Bad test signature
>> COMP: Update tag for wiki examples
>>
>> Brad King (6):
>> COMP: Fix vxl_config_macros usage of CMake check macros
>> ENH: Use if(DEFINED) to simplify conditions
>> COMP: Fix vxl_config_macros checks broken by refactoring
>> COMP: Fix one more vxl_config_macros check broken by refactoring
>> BUG: Fix itk_module_config for repeated calls
>> BUG: Fix itk_module_config for repeated calls
>>
>> Bradley Lowekamp (52):
>> ENH: Adding License file from upstream MetaIO
>> ENH: Adding script to update MetaIO from upstream
>> ENH: Remove ITK MetaIO to prepare for upstream import
>> PERF: Remove dynamically allocated temporary in evaluate method
>> COMP: Fix variable type for Set/Get macros
>> BUG: Implement ITK Style Singleton design pattern
>> ENH: Add no throw exception specification for UnRegister methods
>> COMP: Must specify order as "noexcept override"
>> BUG: Add GetInverse for IdentityTransform
>> ENH: Adding SetIdentity method to base DisplacementField class
>> BUG: Remove unused redefinition of NULL
>> BUG: Don't print to std::cout in PrintSelf
>> ENH: Prefer the PrintSelfObjectMacro for printing nested objects
>> BUG: Use METER of sCAL scale unit
>> BUG: Use PNG_SCALE_METER for PNG sCAL unit
>> BUG: Use METER of sCAL scale unit
>> BUG: Use PNG_SCALE_METER for PNG sCAL unit
>> COMP: Fix signed to unsigned int comparison
>> BUG: Fix overflows computing size of read tiff image
>> ENH: Extract TiffReaderInternal to separate file
>> ENH: Refactor ReadTwoSamplePerPixelImage into template function
>> ENH: Refactor GenericReadImage into template function
>> BUG: Remove Zeiss 2-channel support code in TIFFImageIO ( and
>> LSMImageIO )
>> ENH: Refactor method to convert RGBA image to output buffer
>> ENH: Refactor duplicated code to read a page
>> BUG: Fix right oriented tiff images
>> BUG: Remove dead separated plannar code, add test
>> STYLE: Fix minor kwstyle defects in test and test results
>> BUG: Use array delete operator for array new allocations
>> ENH: add arbitrary TIFF TAGs to meta-data dictionary
>> ENH: Reduce code duplicate in TIFFImageIO::ReadCurrentPage
>> BUG: Address Coverity warning about null pointer dereferences
>> ENH: Remove support for TIFF tile as 3D and dead code
>> ENH: RGBA read images should stay unchanged.
>> BUG: Override method to MakeOutput by name
>> ENH: Refactor per pixel conversion function to per scan-line method
>> PERF: Refactor color table lookup
>> BUG: Adding missing parentheses around boolean expression
>> ENH: adding TIFFImageIO test for RGB palette images
>> PERF: Improve recursive Gaussian perfromance with VectorImages
>> ENH: Query libtiff to determine compression support
>> BUG: Support TIFF tiled image with TIFFReadRGBAImage
>> BUG: Use SizeValueType for length of scanline
>> PERF: Store causal results directly in output buffers
>> COMP: Add explicit conversion to const char
>> COMP: Explicitly add override to GetNameOfClass method
>> COMP: Address internal segmentation fault with Intel compiler
>> ENH: Adding method to set global physical space tolerance
>> COMP: Explicitly add override to GetNameOfClass method
>> BUG: Add new TypeMacro for non-overloaded classes
>> BUG: Fix obscure race condition on access thread pool initialization
>> BUG: Updating FDFImageIO remote module
>>
>> Christopher Mullins (15):
>> COMP: Allows latex to compile for ITKSoftwareGuide
>> COMP: Allows latex to compile for ITKSoftwareGuide
>> COMP: Wrap MeshBase templates
>> COMP: Wrap MeshBase templates
>> COMP: Fix warning in BlockMatchingImageFilter
>> STYLE: Line lengths in examples should be no longer than 80 chars.
>> COMP: Wrap the remaining MeshBase and MeshToMeshFilter types.
>> COMP: Fix LaTeX warnings.
>> STYLE: Fix formatting/punctuation errors.
>> STYLE: Formatting and punctuation fixes.
>> DOC: Edits for Book 2 Chapter 1 documentation in the Examples.
>> DOC: Edits for book 2 chapter 2.
>> DOC: More chapter 2 edits
>> DOC: Book 2 Chapter 3 edits (part 1)
>> DOC: book 2 chapter 4 Segmentation edits
>>
>> Danny Perry (2):
>> BUG: adding test for vnl_sparse_matrix::mult()
>> BUG: size of q buffer should actually be (this->rows())*pcols.
>>
>> David T. Chen (1):
>> DOC: Fixed HistogramThresholdImageFitler
>>
>> Dirk Padfield (1):
>> BUG: Corrected processing of last sigma
>>
>> GCC-XML Upstream (1):
>> ENH: pygccxml v1.6.2 (reduced)
>>
>> Gert Wollny (1):
>> COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
>>
>> Girish Mallya (1):
>> BUG: Tests added for BinaryImageToLabelMapFilter for single-row
>> images.
>>
>> Hans Johnson (24):
>> COMP: Add tolerance for comparing floating point
>> PERF: Remove non-threadable algorithm components
>> COMP: Add tolerance for comparing floating point
>> PERF: Remove non-threadable algorithm components
>> PERF: Remove large foot print of PDF derivatives.
>> PERF: Revert Remove large foot print of PDF derivatives.
>> STYLE: Test against almost equal for floating point values
>> STYLE: Non-exact floating point testing
>> PERF: Distribute initialization per thread buffers
>> ENH: Remove unnecessary mutable qualifier.
>> STYLE: Remove comment with no meaning.
>> ENH: Moved accumlator logic to main MI class
>> ENH: Allow staggering of accumulations per thread.
>> PERF: Zero reset thread buffers during finalize
>> BUG: Syntax error in comment
>> PERF: Add non-blocking mutex locking.
>> ENH: Use TryLock minimize thread stalls
>> BUG: ThreadedIndexedContainerPartitioner is inclusive
>> STYLE: Remove include_regular_expression from Examples
>> BUG: Demonstrate Inv(Inv(T)) != T
>> BUG: Ensure Inv(Inv(T)) == T for transforms
>> COMP: Valgrind detects uninitialized memory read
>> COMP: Missing required base class API component
>> ENH: Expand interface for selecting threadpool
>>
>> Ismael Belghiti (1):
>> DOC: Spelling Error in PatchBasedDenoisingBaseImageFilter
>>
>> Jim Miller (1):
>> STYLE: Removing what appears to be a temporary file
>>
>> Johan Andruejol (1):
>> ENH: Fix normalization for null vectors and return the norm
>>
>> Jon Haitz Legarreta (1):
>> ENH: New test for itkLabelShapeOpeningImageFilter
>>
>> Kent Williams (9):
>> COMP: use find_package(VTK COMPONENTS) to specify just needed VTK
>> Components
>> BUG: ImageSources/test/CMakeLists.txt incorrect library var reference
>> COMP: Fix coverity defects related to RegistrationV4 examples
>> COMP: silence warning of vnl_vector_fixed_ref::assert_size
>> COMP: Fix various Coverity warnings
>> COMP: Fix a typo in an error message print statement.
>> COMP: itk::Command-derived class used pointless dynamic_cast.
>> PERF: Don't recompute InternalInverse repeatedly
>> COMP: Correct orientation/spacing for Philips MultiFrame
>>
>> Mark Hiner (2):
>> ENH: Update SCIFIO remote module hash
>> BUG: Fix duplicate variables in Windows
>>
>> Matthew McCormick (105):
>> DOC: Fix itkSetGetDecoratedInputMacro Doxygen macro.
>> ENH: Move FFTComplexToComplexImageFilter out of Review.
>> ENH: Add VnlComplexToComplexFFTImageFilter.
>> BUG: Use fixed seed for Vnl FFT tests for repeatibility.
>> ENH: Bump CMakeLists.txt version to 4.7.0.
>> BUG: ArchiveTestingData.py future imports must occur at the
>> beginning.
>> BUG: Do not run vnl_test_na with broken libc++.
>> DOC: Remove Image2.cxx reference from Book 2.
>> DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
>> DOC: Remove references to Book 1 sections from Book 2.
>> DOC: Make BinaryThresholdImageFilter not floating.
>> DOC: Fix Software Guide figure caption for FlipImageFilter.
>> DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
>> DOC: Remove duplicate figure in
>> LaplacianRecursiveGaussianImageFilter2.cxx.
>> DOC: ImageRandomConstIteratorWithIndex table reference.
>> DOC: Fix Software Guide page overruns in
>> IterativeClosestPoint{1,2}.cxx.
>> DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
>> BUG: Uninitialized m_TransformDirection in
>> ComplexToComplexFFTImageFilter.
>> BUG: Fix offset[2] in PointSetToSpatialObjectDemonsRegistrationTest.
>> STYLE: Fix style in VoronoiDiagram2D.
>> BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
>> BUG: Bump GCCXML to 2014-08-06.
>> BUG: Remove unused m_{SplitEpsilon,SigmoidPrimeOffset}.
>> BUG: Fix Win MultiThreader check for successful process creation.
>> BUG: Fix VTKPolyDataMeshIO writing for 2D second rank tensor.
>> COMP: Fix ImageRegistration8RegisteredSlice.png baseline name.
>> DOC: itk::statistics -> itk::Statistics.
>> COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
>> BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
>> COMP: Improve const correctness of
>> GradientRecursiveGaussianImageFilter.
>> BUG: Call clear instead of empty on PatchBasedDenoising
>> EmptyCaches().
>> BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
>> COMP: ThreadJob NULL not defined.
>> BUG: Fix alpha assignment for RGBA TIFF.
>> COMP: Remove unused typedefs in LevelSetsv4Visualization.
>> COMP: Remove unused typedef's in VtkGlue.
>> ENH: Mark BSplineWarping2Test as RUNS_LONG.
>> BUG: Fix Nifti IO read with large images.
>> COMP: Remove call for non-existent variable in Nifti debugging.
>> BUG: Close the file on Read and Write in HDF5TransformIO.
>> BUG: Remove InsightLegacy test code from TransformHDF5Test.
>> ENH: Add {Set,Get}TransformIO for TransformFile{Reader,Writer}.
>> STYLE: Use SeriesUIDContainerType and FileNamesContainerType
>> ENH: Allow specification of orthogonality tolerance in rigid
>> transforms.
>> BUG: TransformFileReader does not clear its TransformList.
>> BUG: Prevent dangling pointer in HDF5TransformIO.
>> COMP: Do not use _stat64 with MinGW-32.
>> BUG: Improve thread-safety and performance of
>> PCAShapeSignedDistanceFunction.
>> DOC: itk::statistics -> itk::Statistics.
>> DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
>> DOC: Fix Software Guide page overruns in
>> IterativeClosestPoint{1,2}.cxx.
>> COMP: Address LaplacianDeformation Doxygen warnings.
>> BUG: TransformFileReader does not clear its TransformList.
>> BUG: Prevent dangling pointer in HDF5TransformIO.
>> COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
>> BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform
>> COMP: Do not wrap the FixedArray of Image SmartPointer's.
>> COMP: Add missing wrapping for TransformIOBaseTemplate.
>> COMP: Mark DeformableRegistration6Test as RUNS_LONG.
>> STYLE: Improve style in BinaryImageToLabelMapFilter.
>> BUG: Fix BinaryImageToLabelMapFilter on 1D image.
>> ENH: Improve precision of the joint PDF sum
>> BUG: Fix BinShrinkImageFilter for different input/output image types.
>> COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
>> BUG: Use -py3 when building wrapping for Python 3.
>> COMP: Add missing wrapping for TransformIOBaseTemplate.
>> DOC: Improve ImageRegistration4 grammar.
>> ENH: Add IOTransformDCMTK Remote module.
>> BUG: gdcm::StringFilter recognizes backslash delimiter.
>> DOC: Add migration guide for GDCM Rescale slope intercept apply on
>> write.
>> COMP: Remove unused typedef's in GPU code.
>> STYLE: Improve style of HoughTransform2DLinesImageFilter example.
>> COMP: Use ConceptChecking for IterativeInverse dimension check.
>> COMP: Wrap TransformIOBaseTemplate for const SmartPointer.
>> COMP: Add warning exceptions for third party pcre, swig, gccxml.
>> ENH: Bump ITK version to 4.6.1.
>> BUG: Add missing ITK_OVERRIDE to ITKImageeSources module.
>> BUG: Remove GaussianImageSource members shadowing
>> GenerateImageSource.
>> STYLE: Style fixes to ITKImageSources module.
>> BUG: GaussianSpatialFunction and GaborImageSource use
>> SpacePrecisionType.
>> BUG: Do not perform itk_download_attempt_check when not building ITK.
>> DOC: Update GDCMImageIO rescale slope intercept doc.
>> BUG: Only register requestion IO COMPONENT modules.
>> BUG: Fix wrapping .i, .idx CMake dependencies.
>> COMP: Add VTK Python module when wrapping ITKVtkGlue.
>> STYLE: Remove NULL definition in itkVoronoiDiagram2DGenerator.
>> STYLE: VoronoiDiagram2DGenerator defines a VoronoiDiagramType
>> typedef.
>> COMP: Add missing VTK module dependency for LevelSetsv4Visualization.
>> BUG: By default, do not create any fixed parameters.
>> STYLE: Remove trivial method comments in itkTransform.hxx.
>> BUG: PolylineMask Filter's GenerateData is protected / virtual.
>> ENH: Add HigherOrderAccurateGradient Module.
>> BUG: Use input RequestedRegion Index in SliceBySliceImageFilter
>> internal.
>> COMP: Remove extra semi-colon, variable scope in DCMTKFileReader.
>> STYLE: Style fixes for Transform classes.
>> DOC: Increase Doxygen LOOKUP_CACHE_SIZE.
>> BUG: MatrixOffsetTransformBase::GetFixedParameters not thread safe.
>> DOC: Index Wiki examples with Doxygen.
>> COMP: Bump SphinxExamples remote module.
>> DOC: Index Sphinx examples in Doxygen.
>> COMP: Remove old java examples.
>> COMP: Remove duplicate DiffusionTensor3DReconstruction example
>> reference.
>> COMP: Address GradientAnisotropicDiffusionImageFilter example
>> settings.
>> COMP: Bump Sphinx Examples remote.
>> COMP: Bump WikiExamples remote.
>>
>> MetaIO Maintainers (1):
>> MetaIO (reduced)
>>
>> Michka Popoff (40):
>> ENH: Fixes for python 3 support
>> BUG: Add VTK_VERSION for older VTK versions
>> BUG: Improve SWIG version check
>> COMP: Add wrapping for ThreadPool and ThreadJob
>> COMP: Remove unimplemented DestroyPool method
>> COMP: Fix itkVnlComplexToComplexFFTImageFilter wrapping
>> COMP: Do not hide pygccxml warnings
>> ENH: Update links in readme file
>> BUG: Improve SWIG version check
>> BUG: Add VTK_VERSION for older VTK versions
>> STYLE: Remove trailing whitespaces
>> STYLE: Set ITK_USE_SYTEM_ZLIB and ITK_USE_SYTEM_SZIP
>> BUG: Fix memory leak in MetaImageIO after exception
>> ENH: Add script to update pygccxml from upstream
>> BUG: Update VTK minimum version (for release)
>> BUG: Fix memory leak in MetaImageIO after exception
>> ENH: Remove Sun OS compatibility for the wrappings
>> COMP: Fix for conversion to non-pointer like type warning
>> STYLE: LabelObject style
>> DOC: Remove broken link from LabelObject class description
>> ENH: Do not setup the python tests if not asked
>> ENH: Add new GetTypes() and GetTypesAsList() methods to the template
>> class
>> COMP: Fix CMP0054 warnings in wrappings
>> STYLE: Remove old cmake < 2.8.4 specific code
>> STYLE: Remove old cmake < 2.8.5 specific code
>> ENH: Update to PCRE 8.36
>> COMP: Refactor Wrapping setup and fix legacy warnings
>> ENH: Add wrapping configuration to ITKConfig.cmake
>> STYLE: Some minor code cleanup in the wrapping setup
>> DOC: Fix typo in RelabelComponentImageFilter
>> ENH: Deprecate VectorResampleImageFilter
>> DOC: Add migration guide for ::Zero and ::One
>> ENH: Deprecate ::Zero and ::One
>> ENH: Add option to disable sorting by size in
>> itkRelabelComponentImageFilter
>> ENH: Add Vector and RGB wrapping to linear interpolator
>> STYLE: Remove SORT macro in wrappings
>> COMP: Fix warning for InterpolateImageFunction wrapping
>> COMP: Add a check for Blocks in GPU module
>> COMP: Bump SCIFIO to fix test build warnings
>> COMP: Fix wrapping of itkImageFunctionBase
>>
>> Nick Tustison (7):
>> BUG: Need to explicitly specify spline order.
>> ENH: Initializing the transform center.
>> BUG: Need to check the dynamic cast before any calls.
>> ENH: Adding modifications for point set metrics.
>> BUG: Need to specify TInternalComputationValueType for default
>> metric.
>> ENH: Adding sparse points to B-spline field estimate.
>> BUG: Uninitialized variables.
>>
>> Richard Beare (1):
>> ENH: Include TIFF tags in the MetaDataDictionary
>>
>> Taylor Braun-Jones (1):
>> BUG: Fix SliceBySliceImageFilter doesn't propagate information
>> internally
>>
>> Umang B (1):
>> ENH: Use thread pool to dispatch multithreading tasks
>>
>> Vivien Delmon (2):
>> BUG: ExtractImageFilter::CollapseToSubMatrix fix
>> ENH: Add a test on extracted directions in CollapseToSubMatrix mode
>>
>> Vladimir S. FONOV (1):
>> BUG: Fixing incorrect MINC style inverse transform
>>
>>
>> -----------------------------------------------------
>> Errors or omissions? Please fix them here:
>>
>>
>> https://docs.google.com/document/d/1V0zNgFrm_GyF1jOC00fMq-7VBXk4hHmHL62qByfeKP4/edit?usp=sharing
>>
>>
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>>
>
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