[Insight-developers] itkMath doxygen missing?

[Bradley Lowekamp]

Hello,

I tried out a configuration to build doxygen. It's on a VM I have which I only allocated 2 vCPUs and 8GB of memory on our VM server which has 2-quad core 3.47Ghz Xeon processors ( x2 hyper-threaded). ( If you are keeping track at home all the machines labeled lhcp-*vm are running on the same physical box. ) As doxygen is a single threaded process this seems like the ideal way to allocate resources to this process, since there is no need to utilize a whole machine.

However, it is reporting that it takes ~12 hour to run. And there are some errors which I assume are cause by an older version of doxygen.

Hopefully, there will be some to discuss the best way to deal with doxygen at a TCON.

Brad

On Jun 12, 2012, at 11:33 PM, Matt McCormick wrote:

> Hey Brad,
> 
> The build is running on a 2nd Gen Intel Core 2 (i7) processor at 2.8
> GHz, which I think the limiting factor since it runs single-threaded
> for most of the time.  It still takes 12 hours, which is not nearly as
> good as Arnaud's 8 hours!
> 
> Arnaud has some ideas to modularize, which might make it faster...
> 
> The nightly xml can now be found here:
> 
>  http://public.kitware.com/pub/itk/itk-doxygen-xml.tar.gz
> 
> Along with the Doxygen tag file:
> 
>  http://public.kitware.com/pub/itk/InsightDoxygen.tag.gz
> 
> I still have to work with Luis to figure out how to update the nightly html.
> 
> If you want to make a link on the front page, that sounds good.
> 
> Thanks,
> Matt
> 
> On Tue, Jun 12, 2012 at 9:37 PM, Bradley Lowekamp
> <blowekamp at mail.nih.gov> wrote:
>> Hello Matt,
>> 
>> I see you are running the doxygen on the dashboard.
>> 
>> This is good you are able to run it, in your basement. When I have run it recently it has taken me over 24hrs for some odd reason. My virtual machine server is really getting taxed.  I don't know what resources the process needs to run efficiently.
>> 
>> I also see that you have the XML generation turned on. Is there a place where I can download the XML? I would like to mine it for some documentation for SimpleITK. Perhaps we should have it linked of the front page of the Doxygen?
>> 
>> Brad
>> 
>> 
>> On Jun 7, 2012, at 2:44 AM, Matt McCormick wrote:
>> 
>>> Hi Arnaud,
>>> 
>>> I have setup my home box to generate Doxygen:
>>> 
>>>  http://open.cdash.org/buildSummary.php?buildid=2328774
>>> 
>>> I'll contact you and Luis off list to get the results uploaded to the
>>> appropriate locations.
>>> 
>>> Thanks,
>>> Matt
>>> 
>>> On Wed, Jun 6, 2012 at 10:58 AM, Arnaud Gelas <arnaudgelas at gmail.com> wrote:
>>>> Hi Brad,
>>>> 
>>>> I can't anymore build the doxygen documentation every night on my machine.
>>>> It takes more and more time to generate it for the whole toolkit.
>>>> It would be great if the documentation could be also modularized, it will
>>>> really decrease the time...
>>>> 
>>>> I was planing to send an email on the list, I could generate it for each rc,
>>>> or once a week; unless someone else has a machine to do this job?
>>>> 
>>>> Arnaud
>>>> 
>>>> 
>>>> On 06/05/2012 10:05 PM, Bradley Lowekamp wrote:
>>>> 
>>>> Hello David,
>>>> 
>>>> The other interesting bit is the generated date at the bottom of the page:
>>>> 
>>>> "Generated on Sat Jun 2 2012 02:34:31 for ITK"
>>>> 
>>>> Looks like the systems had some kind of hiccup.
>>>> 
>>>> Brad
>>>> 
>>>> On Jun 5, 2012, at 3:56 PM, David Doria wrote:
>>>> 
>>>> I noticed that this page is not found:
>>>> http://www.itk.org/Doxygen/html/classitk_1_1Math.html
>>>> 
>>>> but everything else seems to be working (e.g.
>>>> http://www.itk.org/Doxygen/html/classitk_1_1Vector.html)
>>>> 
>>>> Does anyone know why?
>>>> 
>>>> David
>>>> _______________________________________________
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>>>> 
>>>> ========================================================
>>>> 
>>>> Bradley Lowekamp
>>>> 
>>>> Medical Science and Computing for
>>>> 
>>>> Office of High Performance Computing and Communications
>>>> 
>>>> National Library of Medicine
>>>> 
>>>> blowekamp at mail.nih.gov
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>> 
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>> 
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://kitware.com/products/protraining.php
>>>> 
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>> 
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-developers
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>> 
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>> 
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://kitware.com/products/protraining.php
>>>> 
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>> 
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-developers
>>>> 
>> 

========================================================
Bradley Lowekamp  
Medical Science and Computing for
Office of High Performance Computing and Communications
National Library of Medicine 
blowekamp at mail.nih.gov



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