[Insight-developers] Failing tests and compile errors after your check in

[Bill Lorensen]

Dan,

Why are you not using gerrit?

Bill

On Thu, Feb 17, 2011 at 4:57 PM, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
> Hi Gaetan,
>
>  Can you pull a fix from my Github?
>
> git pull git://github.com/dblezek/ITK.git Platform_specific_thread_objects
>
> On linux, the -lrt flag is not needed (do not know why).  This is a CMake
> change, hopefully it will work.
>
> -dan
>
> On 2/17/11 11:52 AM, "Gaëtan Lehmann" <gaetan.lehmann at jouy.inra.fr> wrote:
>
>>
>> Le 17 févr. 11 à 18:36, Daniel Blezek a écrit :
>>
>>> Hi Gaetan,
>>>
>>>  The link errors are (for some reason I thought this was your
>>> machine, I
>>> could be wrong):
>>>
>>> sem_destroy                         ../../../bin/libITKCommon.so.4.0.0
>>> sem_open                            ../../../bin/libITKCommon.so.4.0.0
>>> sem_post                            ../../../bin/libITKCommon.so.4.0.0
>>> sem_wait                            ../../../bin/libITKCommon.so.4.0.0
>>>
>>> http://www.cdash.org/CDash/viewBuildError.php?buildid=865055
>>>
>>> On Linux these symbols are in librt.  I don't know what the library
>>> would be
>>> on the Sun.  This should be a relatively straightforward fix.
>>>
>>> NB: I removed the sun specific threading code (mainly semaphores)
>>> because
>>> Oracle's docs claimed the Sun had POSIX compliance.  It is likely
>>> that our
>>> CMake code doesn't find the right library on the Sun.
>>
>> adding rt in the linker command seems to work.
>>
>> [glehmann at itk2 IO]$ /local/bin/g++ -lrt    -ftemplate-depth-50 -Wall -
>> Wno-deprecated -D_PTHREADS  -L/lib  CMakeFiles/itkTestDriver.dir/
>> itkTestDriver.cxx.o  -o ../../bin
>> /itkTestDriver  -L/home/papha/glehmann/src/ITK/build/bin ../../bin/
>> libITKIO.so.4.0.0 ../../bin/libITKNrrdIO.so.4.0.0 ../../bin/
>> libgdcmMSFF.so.2.0.17 ../../bin/libgdcmDI
>> CT.so.2.0.17 ../../bin/libgdcmIOD.so.2.0.17 ../../bin/libgdcmDSED.so.
>> 2.0.17 ../../bin/libgdcmCommon.so.2.0.17 ../../bin/libitkpng.so.
>> 4.0.0 ../../bin/libitktiff.so.4.0.0
>>   ../../bin/libitkjpeg.so.4.0.0 ../../bin/libITKSpatialObject.so.
>> 4.0.0 ../../bin/libITKCommon.so.4.0.0 ../../bin/libitkvnl_inst.so.
>> 4.0.0 ../../bin/libitkvnl_algo.so.4.0.
>> 0 ../../bin/libitkv3p_netlib.so.4.0.0 ../../bin/libitkvnl.so.
>> 4.0.0 ../../bin/libitkvcl.so.4.0.0 ../../bin/libitkv3p_lsqr.so.4.0.0 -
>> lm -lthread -lmalloc ../../bin/libITK
>> MetaIO.so.4.0.0 -lsocket -lnsl ../../bin/libitksys.so.4.0.0 -ldl ../../
>> bin/libITKDICOMParser.so.4.0.0 ../../bin/libITKEXPAT.so.4.0.0 ../../
>> bin/libITKniftiio.so.4.0.0 -l
>> m ../../bin/libITKznz.so.4.0.0 ../../bin/libitkzlib.so.4.0.0 -Wl,-R/
>> home/papha/glehmann/src/ITK/build/bin:
>>
>> I have no idea where this is configured in ITK, and "rt" is not
>> exactly something rare enough to let me search with a grep.
>> Can tell me where I should look?
>>
>> Thanks,
>>
>> Gaëtan
>>
>>
>>>
>>> Best,
>>> -dan
>>>
>>>
>>> On 2/17/11 11:30 AM, "Gaëtan Lehmann" <gaetan.lehmann at jouy.inra.fr>
>>> wrote:
>>>
>>>>
>>>> Le 17 févr. 11 à 18:25, Daniel Blezek a écrit :
>>>>
>>>>> Are you referring to the 2 sun builds?  I'll need some help from
>>>>> Gaetan to
>>>>> make sure the Sun links to the right Semaphore library.
>>>>
>>>> I'd be pleased to help - just let me know what you need.
>>>>
>>>>>
>>>>> All the other errors seem to be WrapITK or GDCM errors.
>>>>
>>>> I'm working on the WrapITK errors.
>>>>
>>>> Gaëtan
>>>>
>>>>>
>>>>> -dan
>>>>>
>>>>>
>>>>> On 2/17/11 11:07 AM, "Bill Lorensen" <bill.lorensen at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Dan,
>>>>>>
>>>>>> I assume you noticed the failing tests and build errors after your
>>>>>> check in yesterday?
>>>>>>
>>>>>> Bill
>>>>>
>>>>> --
>>>>> Daniel Blezek, PhD
>>>>> Medical Imaging Informatics Innovation Center
>>>>>
>>>>> P 127 or (77) 8 8886
>>>>> T 507 538 8886
>>>>> E blezek.daniel at mayo.edu
>>>>>
>>>>> Mayo Clinic
>>>>> 200 First St. S.W.
>>>>> Harwick SL-44
>>>>> Rochester, MN 55905
>>>>> mayoclinic.org
>>>>> "It is more complicated than you think." -- RFC 1925
>>>>>
>>>
>>> --
>>> Daniel Blezek, PhD
>>> Medical Imaging Informatics Innovation Center
>>>
>>> P 127 or (77) 8 8886
>>> T 507 538 8886
>>> E blezek.daniel at mayo.edu
>>>
>>> Mayo Clinic
>>> 200 First St. S.W.
>>> Harwick SL-44
>>> Rochester, MN 55905
>>> mayoclinic.org
>>> "It is more complicated than you think." -- RFC 1925
>>>
>
> --
> Daniel Blezek, PhD
> Medical Imaging Informatics Innovation Center
>
> P 127 or (77) 8 8886
> T 507 538 8886
> E blezek.daniel at mayo.edu
>
> Mayo Clinic
> 200 First St. S.W.
> Harwick SL-44
> Rochester, MN 55905
> mayoclinic.org
> "It is more complicated than you think." -- RFC 1925
>
>