[Insight-developers] Failing tests and compile errors after your check in

[Daniel Blezek]

Hi Gaetan,

  Can you pull a fix from my Github?

git pull git://github.com/dblezek/ITK.git Platform_specific_thread_objects

On linux, the -lrt flag is not needed (do not know why).  This is a CMake
change, hopefully it will work.

-dan

On 2/17/11 11:52 AM, "Gaëtan Lehmann" <gaetan.lehmann at jouy.inra.fr> wrote:

> 
> Le 17 févr. 11 à 18:36, Daniel Blezek a écrit :
> 
>> Hi Gaetan,
>> 
>>  The link errors are (for some reason I thought this was your
>> machine, I
>> could be wrong):
>> 
>> sem_destroy                         ../../../bin/libITKCommon.so.4.0.0
>> sem_open                            ../../../bin/libITKCommon.so.4.0.0
>> sem_post                            ../../../bin/libITKCommon.so.4.0.0
>> sem_wait                            ../../../bin/libITKCommon.so.4.0.0
>> 
>> http://www.cdash.org/CDash/viewBuildError.php?buildid=865055
>> 
>> On Linux these symbols are in librt.  I don't know what the library
>> would be
>> on the Sun.  This should be a relatively straightforward fix.
>> 
>> NB: I removed the sun specific threading code (mainly semaphores)
>> because
>> Oracle's docs claimed the Sun had POSIX compliance.  It is likely
>> that our
>> CMake code doesn't find the right library on the Sun.
> 
> adding rt in the linker command seems to work.
> 
> [glehmann at itk2 IO]$ /local/bin/g++ -lrt    -ftemplate-depth-50 -Wall -
> Wno-deprecated -D_PTHREADS  -L/lib  CMakeFiles/itkTestDriver.dir/
> itkTestDriver.cxx.o  -o ../../bin
> /itkTestDriver  -L/home/papha/glehmann/src/ITK/build/bin ../../bin/
> libITKIO.so.4.0.0 ../../bin/libITKNrrdIO.so.4.0.0 ../../bin/
> libgdcmMSFF.so.2.0.17 ../../bin/libgdcmDI
> CT.so.2.0.17 ../../bin/libgdcmIOD.so.2.0.17 ../../bin/libgdcmDSED.so.
> 2.0.17 ../../bin/libgdcmCommon.so.2.0.17 ../../bin/libitkpng.so.
> 4.0.0 ../../bin/libitktiff.so.4.0.0
>   ../../bin/libitkjpeg.so.4.0.0 ../../bin/libITKSpatialObject.so.
> 4.0.0 ../../bin/libITKCommon.so.4.0.0 ../../bin/libitkvnl_inst.so.
> 4.0.0 ../../bin/libitkvnl_algo.so.4.0.
> 0 ../../bin/libitkv3p_netlib.so.4.0.0 ../../bin/libitkvnl.so.
> 4.0.0 ../../bin/libitkvcl.so.4.0.0 ../../bin/libitkv3p_lsqr.so.4.0.0 -
> lm -lthread -lmalloc ../../bin/libITK
> MetaIO.so.4.0.0 -lsocket -lnsl ../../bin/libitksys.so.4.0.0 -ldl ../../
> bin/libITKDICOMParser.so.4.0.0 ../../bin/libITKEXPAT.so.4.0.0 ../../
> bin/libITKniftiio.so.4.0.0 -l
> m ../../bin/libITKznz.so.4.0.0 ../../bin/libitkzlib.so.4.0.0 -Wl,-R/
> home/papha/glehmann/src/ITK/build/bin:
> 
> I have no idea where this is configured in ITK, and "rt" is not
> exactly something rare enough to let me search with a grep.
> Can tell me where I should look?
> 
> Thanks,
> 
> Gaëtan
> 
> 
>> 
>> Best,
>> -dan
>> 
>> 
>> On 2/17/11 11:30 AM, "Gaëtan Lehmann" <gaetan.lehmann at jouy.inra.fr>
>> wrote:
>> 
>>> 
>>> Le 17 févr. 11 à 18:25, Daniel Blezek a écrit :
>>> 
>>>> Are you referring to the 2 sun builds?  I'll need some help from
>>>> Gaetan to
>>>> make sure the Sun links to the right Semaphore library.
>>> 
>>> I'd be pleased to help - just let me know what you need.
>>> 
>>>> 
>>>> All the other errors seem to be WrapITK or GDCM errors.
>>> 
>>> I'm working on the WrapITK errors.
>>> 
>>> Gaëtan
>>> 
>>>> 
>>>> -dan
>>>> 
>>>> 
>>>> On 2/17/11 11:07 AM, "Bill Lorensen" <bill.lorensen at gmail.com>
>>>> wrote:
>>>> 
>>>>> Dan,
>>>>> 
>>>>> I assume you noticed the failing tests and build errors after your
>>>>> check in yesterday?
>>>>> 
>>>>> Bill
>>>> 
>>>> -- 
>>>> Daniel Blezek, PhD
>>>> Medical Imaging Informatics Innovation Center
>>>> 
>>>> P 127 or (77) 8 8886
>>>> T 507 538 8886
>>>> E blezek.daniel at mayo.edu
>>>> 
>>>> Mayo Clinic
>>>> 200 First St. S.W.
>>>> Harwick SL-44
>>>> Rochester, MN 55905
>>>> mayoclinic.org
>>>> "It is more complicated than you think." -- RFC 1925
>>>> 
>> 
>> -- 
>> Daniel Blezek, PhD
>> Medical Imaging Informatics Innovation Center
>> 
>> P 127 or (77) 8 8886
>> T 507 538 8886
>> E blezek.daniel at mayo.edu
>> 
>> Mayo Clinic
>> 200 First St. S.W.
>> Harwick SL-44
>> Rochester, MN 55905
>> mayoclinic.org
>> "It is more complicated than you think." -- RFC 1925
>> 

-- 
Daniel Blezek, PhD
Medical Imaging Informatics Innovation Center

P 127 or (77) 8 8886
T 507 538 8886
E blezek.daniel at mayo.edu

Mayo Clinic
200 First St. S.W.
Harwick SL-44
Rochester, MN 55905
mayoclinic.org
"It is more complicated than you think." -- RFC 1925