[Insight-developers] SimpleITK dashboard

[Dan Mueller]

Hi Dan B,

Typically the exe can find its dependencies if the required .dlls and
.so files reside in the same directory. I would not expect you to need
to add the binary directory to the mono LD_LIBRARY_PATH environment
variable.

Does the native.so actually exist in
../SimpleITK-linux/Wrapping/CSharpBinaries? Perhaps there was a build
issue?

Dan M

On 2 August 2011 14:52, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
> Dan M.,
>
>  Thanks for the patch!  Here's my current progress... perhaps you can help
> out?  Mono can't seem to find the Native library (bit of a mess below).  I
> set my LD_LIBRARY_PATH to include the directory of
> libSimpleITKCSharpNative.so, but didn't help.
>
> Best,
> -dan
>
>
> mi3c-qbert:SimpleITK-linux blezek$ clear && env
> LD_LIBRARY_PATH=/home/blezek/Source/SimpleITK-linux/Wrapping/CSharpBinaries/
> /opt/novell/mono/bin/mono
> /home/blezek/Source/SimpleITK-linux/Wrapping/CSharpBinaries/TestSinImageFilt
> er.exe /home/blezek/Source/SimpleITK/Testing/Data/Input/RA-Short.nrrd
> defaults
> /home/blezek/Source/SimpleITK/Testing/Data/Input/Ramp-Zero-One-Float.nrrd
> /home/blezek/Source/SimpleITK-linux/Testing/Temporary/CSharp-Sin-defaults.nr
> rd
>
> ERROR: System.TypeInitializationException: An exception was thrown by the
> type initializer for itk.simple.SimpleITKPINVOKE --->
> System.TypeInitializationException: An exception was thrown by the type
> initializer for SWIGExceptionHelper ---> System.DllNotFoundException:
> libSimpleITKCSharpNative
>  at (wrapper managed-to-native)
> itk.simple.SimpleITKPINVOKE/SWIGExceptionHelper:SWIGRegisterExceptionCallbac
> ks_SimpleITK
> (itk.simple.SimpleITKPINVOKE/SWIGExceptionHelper/ExceptionDelegate,itk.simpl
> e.SimpleITKPINVOKE/SWIGExceptionHelper/ExceptionDelegate,itk.simple.SimpleIT
> KPINVOKE/SWIGExceptionHelper/ExceptionDelegate,itk.simple.SimpleITKPINVOKE/S
> WIGExceptionHelper/ExceptionDelegate,itk.simple.SimpleITKPINVOKE/SWIGExcepti
> onHelper/ExceptionDelegate,itk.simple.SimpleITKPINVOKE/SWIGExceptionHelper/E
> xceptionDelegate,itk.simple.SimpleITKPINVOKE/SWIGExceptionHelper/ExceptionDe
> legate,itk.simple.SimpleITKPINVOKE/SWIGExceptionHelper/ExceptionDelegate,itk
> .simple.SimpleITKPINVOKE/SWIGExceptionHelper/ExceptionDelegate,itk.simple.Si
> mpleITKPINVOKE/SWIGExceptionHelper/ExceptionDelegate,itk.simple.SimpleITKPIN
> VOKE/SWIGExceptionHelper/ExceptionDelegate)
>  at itk.simple.SimpleITKPINVOKE+SWIGExceptionHelper..cctor () [0x00000] in
> <filename unknown>:0
>  --- End of inner exception stack trace ---
>  at itk.simple.SimpleITKPINVOKE..cctor () [0x00000] in <filename unknown>:0
>  --- End of inner exception stack trace ---
>  at itk.simple.ImageFileReader..ctor () [0x00000] in <filename unknown>:0
>  at TestSinImageFilter.Main (System.String[] args) [0x00000] in <filename
> unknown>:0
>
>
>
>
> On 8/2/11 7:39 AM, "Dan Mueller" <dan.muel at gmail.com> wrote:
>
>> Hi Dan B,
>>
>> I tried pushing the patch to gerrit over on the weekend, but I made a
>> mess due to being on next not master.
>>
>> If you need the changeset, here it is:
>>     http://review.source.kitware.com/#change,2360
>>
>> Regards, Dan Mueller
>>
>> On 2 August 2011 13:39, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
>>> Hi Dan,
>>>
>>>> I'm having trouble reproducing using a virtual machine...
>>>>
>>>> The attached diff should avoid the issue (avoid rather than solve).
>>>> This seems to works on my 32-bit Ubuntu machine...
>>>
>>> I solved this by upgrading to Mono 2.  The platform flag needs to be anycpu,
>>> because our AMD64 systems didn't properly the x64 flag.
>>>
>>> Will try to get into the nightly today.
>>> -dan
>>>
>>>
>>>
>
> --
> Daniel Blezek, PhD
> Medical Imaging Informatics Innovation Center
>
> P 127 or (77) 8 8886
> T 507 538 8886
> E blezek.daniel at mayo.edu
>
> Mayo Clinic
> 200 First St. S.W.
> Harwick SL-44
> Rochester, MN 55905
> mayoclinic.org
> "It is more complicated than you think." -- RFC 1925
>
>