[Insight-developers] WrapITK build errors
Gaëtan Lehmann
gaetan.lehmann at jouy.inra.fr
Tue Nov 16 15:19:37 EST 2010
Hi Michal,
I've proposed a fix for that problem
http://review.source.kitware.com/#change,369
It would be nice if you can test it and report the result in the link
above.
Gaëtan
Le 16 nov. 10 à 17:19, Michal Suchanek a écrit :
> Hello
>
> Since ITK was fixed to build with libjpeg I tried to rebuild ITK and
> WrapITK with it.
>
> While ITK builds fine WrapITK has some issues.
>
> First the ITK installation directory changed from
> /usr/lib/InsightToolkit to /usr/lib/InsightToolkit-4.0 and it is not
> found there by CMake.
>
> The error is reported from /usr/share/cmake-2.8/Modules/FindITK.cmake
> so I see two issues here:
>
> 1) ITK is not found
> 2) the file which is used to search for ITK and contains the ITK
> installation path is installed by CMake, not ITK.
>
> The other issue is that WrapITK fails to compile:
>
> [ 30%] Building CXX object
> Libraries/Base/CMakeFiles/BasePython.dir/
> wrap_itkImageBoundaryConditionPython.o
> cd /scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base
> && /usr/bin/g++ -DBasePython_EXPORTS -DSWIG_GLOBAL -g -O2 -g -Wall
> -O2 -Wno-deprecated -ftemplate-depth-50 -Wall -Wno-deprecated -fPIC
> -I/scratch/itk/wrapitk-read-only/Libraries/Base
> -I/usr/include/InsightToolkit-4.0/Review
> -I/usr/include/InsightToolkit-4.0/gdcm/Source/DataDictionary
> -I/usr/include/InsightToolkit-4.0/gdcm/Source/
> MediaStorageAndFileFormat
> -I/usr/include/InsightToolkit-4.0/gdcm/Source/
> DataStructureAndEncodingDefinition
> -I/usr/include/InsightToolkit-4.0/gdcm/Source/Common
> -I/usr/include/InsightToolkit-4.0/Utilities/vxl/core
> -I/usr/include/InsightToolkit-4.0/Utilities/vxl/vcl
> -I/usr/include/InsightToolkit-4.0/Utilities/vxl/v3p/netlib
> -I/usr/include/InsightToolkit-4.0/Utilities
> -I/usr/include/InsightToolkit-4.0/Utilities/itkExtHdrs
> -I/usr/include/InsightToolkit-4.0/Utilities/nifti/znzlib
> -I/usr/include/InsightToolkit-4.0/Utilities/nifti/niftilib
> -I/usr/include/InsightToolkit-4.0/Utilities/expat
> -I/usr/include/InsightToolkit-4.0/Utilities/DICOMParser
> -I/usr/include/InsightToolkit-4.0/Utilities/NrrdIO
> -I/usr/include/InsightToolkit-4.0/Utilities/MetaIO
> -I/usr/include/InsightToolkit-4.0/SpatialObject
> -I/usr/include/InsightToolkit-4.0/Numerics/NeuralNetworks
> -I/usr/include/InsightToolkit-4.0/Numerics/FEM
> -I/usr/include/InsightToolkit-4.0/IO
> -I/usr/include/InsightToolkit-4.0/Numerics
> -I/usr/include/InsightToolkit-4.0/Common
> -I/usr/include/InsightToolkit-4.0/BasicFilters
> -I/usr/include/InsightToolkit-4.0/Algorithms
> -I/usr/include/InsightToolkit-4.0/Numerics/Statistics
> -I/usr/include/InsightToolkit-4.0 -I/usr/include/gdcm-2.0
> -I/usr/include/vtk-5.6 -I/usr/lib/openmpi/include
> -I/usr/lib/openmpi/include/openmpi -I/usr/include/tcl8.5
> -I/usr/include/python2.6 -I/usr/lib/jvm/default-java/include
> -I/usr/include/libxml2 -I/usr/include/freetype2
> -I/scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Typedefs
> -I/usr/lib/jvm/java-6-openjdk/include -fno-strict-aliasing -o
> CMakeFiles/BasePython.dir/wrap_itkImageBoundaryConditionPython.o -c
> /scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/
> wrap_itkImageBoundaryConditionPython.cpp
> /scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/
> wrap_itkFlatStructuringElementPython.cpp:4943:
> instantiated from here
> /usr/include/InsightToolkit-4.0/Algorithms/
> itkFlatStructuringElement.txx:601:
> error: conversion from ‘itk::FlatStructuringElement<2u>’ to non-scalar
> type ‘itk::FlatStructuringElement<3u>’ requested
> /usr/include/InsightToolkit-4.0/Algorithms/
> itkFlatStructuringElement.txx:
> In static member function ‘static itk::FlatStructuringElement<2u>
> itk::FlatStructuringElement<VDimension>::Polygon(itk::Size<2u>,
> unsigned int) [with unsigned int VDimension = 3u]’:
> /scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/
> wrap_itkFlatStructuringElementPython.cpp:5677:
> instantiated from here
> /usr/include/InsightToolkit-4.0/Algorithms/
> itkFlatStructuringElement.txx:57:
> error: no matching function for call to
> ‘itk::FlatStructuringElement<3u>::SetRadius(itk::Size<2u>&)’
> /usr/include/InsightToolkit-4.0/Common/itkNeighborhood.txx:92: note:
> candidates are: void itk::Neighborhood<TPixel, VDimension,
> TAllocator>::SetRadius(const itk::Size<VDimension>&) [with TPixel =
> bool, unsigned int VDimension = 3u, TAllocator =
> itk::NeighborhoodAllocator<bool>]
> /usr/include/InsightToolkit-4.0/Common/itkNeighborhood.h:183: note:
> void itk::Neighborhood<TPixel, VDimension,
> TAllocator>::SetRadius(const long unsigned int*) [with TPixel = bool,
> unsigned int VDimension = 3u, TAllocator =
> itk::NeighborhoodAllocator<bool>]
> /usr/include/InsightToolkit-4.0/Common/itkNeighborhood.txx:78: note:
> void itk::Neighborhood<TPixel, VDimension,
> TAllocator>::SetRadius(long unsigned int) [with TPixel = bool,
> unsigned int VDimension = 3u, TAllocator =
> itk::NeighborhoodAllocator<bool>]
> /scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/
> wrap_itkFlatStructuringElementPython.cpp:5677:
> instantiated from here
> /usr/include/InsightToolkit-4.0/Algorithms/
> itkFlatStructuringElement.txx:109:
> error: conversion from ‘itk::FlatStructuringElement<3u>’ to non-scalar
> type ‘itk::FlatStructuringElement<2u>’ requested
> make[3]: *** [Libraries/Base/CMakeFiles/BasePython.dir/
> wrap_itkFlatStructuringElementPython.o]
> Error 1
>
> Thanks
>
> Michal
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-developers
--
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
http://voxel.jouy.inra.fr http://www.itk.org
http://www.mandriva.org http://www.bepo.fr
-------------- next part --------------
A non-text attachment was scrubbed...
Name: PGP.sig
Type: application/pgp-signature
Size: 203 bytes
Desc: Ceci est une signature ?lectronique PGP
URL: <http://www.itk.org/mailman/private/insight-developers/attachments/20101116/5001a449/attachment.pgp>
More information about the Insight-developers
mailing list