[Insight-developers] WrapITK build errors

[Michal Suchanek]

Hello

Since ITK was fixed to build with libjpeg I tried to rebuild ITK and
WrapITK with it.

While ITK builds fine WrapITK has some issues.

First the ITK installation directory changed from
/usr/lib/InsightToolkit to /usr/lib/InsightToolkit-4.0 and it is not
found there by CMake.

The error is reported from /usr/share/cmake-2.8/Modules/FindITK.cmake
so I see two issues here:

1) ITK is not found
2) the file which is used to search for ITK and contains the ITK
installation path is installed by CMake, not ITK.

The other issue is that WrapITK fails to compile:

[ 30%] Building CXX object
Libraries/Base/CMakeFiles/BasePython.dir/wrap_itkImageBoundaryConditionPython.o
cd /scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base
&& /usr/bin/g++   -DBasePython_EXPORTS -DSWIG_GLOBAL -g -O2 -g -Wall
-O2  -Wno-deprecated  -ftemplate-depth-50 -Wall -Wno-deprecated -fPIC
-I/scratch/itk/wrapitk-read-only/Libraries/Base
-I/usr/include/InsightToolkit-4.0/Review
-I/usr/include/InsightToolkit-4.0/gdcm/Source/DataDictionary
-I/usr/include/InsightToolkit-4.0/gdcm/Source/MediaStorageAndFileFormat
-I/usr/include/InsightToolkit-4.0/gdcm/Source/DataStructureAndEncodingDefinition
-I/usr/include/InsightToolkit-4.0/gdcm/Source/Common
-I/usr/include/InsightToolkit-4.0/Utilities/vxl/core
-I/usr/include/InsightToolkit-4.0/Utilities/vxl/vcl
-I/usr/include/InsightToolkit-4.0/Utilities/vxl/v3p/netlib
-I/usr/include/InsightToolkit-4.0/Utilities
-I/usr/include/InsightToolkit-4.0/Utilities/itkExtHdrs
-I/usr/include/InsightToolkit-4.0/Utilities/nifti/znzlib
-I/usr/include/InsightToolkit-4.0/Utilities/nifti/niftilib
-I/usr/include/InsightToolkit-4.0/Utilities/expat
-I/usr/include/InsightToolkit-4.0/Utilities/DICOMParser
-I/usr/include/InsightToolkit-4.0/Utilities/NrrdIO
-I/usr/include/InsightToolkit-4.0/Utilities/MetaIO
-I/usr/include/InsightToolkit-4.0/SpatialObject
-I/usr/include/InsightToolkit-4.0/Numerics/NeuralNetworks
-I/usr/include/InsightToolkit-4.0/Numerics/FEM
-I/usr/include/InsightToolkit-4.0/IO
-I/usr/include/InsightToolkit-4.0/Numerics
-I/usr/include/InsightToolkit-4.0/Common
-I/usr/include/InsightToolkit-4.0/BasicFilters
-I/usr/include/InsightToolkit-4.0/Algorithms
-I/usr/include/InsightToolkit-4.0/Numerics/Statistics
-I/usr/include/InsightToolkit-4.0 -I/usr/include/gdcm-2.0
-I/usr/include/vtk-5.6 -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -I/usr/include/tcl8.5
-I/usr/include/python2.6 -I/usr/lib/jvm/default-java/include
-I/usr/include/libxml2 -I/usr/include/freetype2
-I/scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Typedefs
-I/usr/lib/jvm/java-6-openjdk/include   -fno-strict-aliasing -o
CMakeFiles/BasePython.dir/wrap_itkImageBoundaryConditionPython.o -c
/scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/wrap_itkImageBoundaryConditionPython.cpp
/scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/wrap_itkFlatStructuringElementPython.cpp:4943:
  instantiated from here
/usr/include/InsightToolkit-4.0/Algorithms/itkFlatStructuringElement.txx:601:
error: conversion from ‘itk::FlatStructuringElement<2u>’ to non-scalar
type ‘itk::FlatStructuringElement<3u>’ requested
/usr/include/InsightToolkit-4.0/Algorithms/itkFlatStructuringElement.txx:
In static member function ‘static itk::FlatStructuringElement<2u>
itk::FlatStructuringElement<VDimension>::Polygon(itk::Size<2u>,
unsigned int) [with unsigned int VDimension = 3u]’:
/scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/wrap_itkFlatStructuringElementPython.cpp:5677:
  instantiated from here
/usr/include/InsightToolkit-4.0/Algorithms/itkFlatStructuringElement.txx:57:
error: no matching function for call to
‘itk::FlatStructuringElement<3u>::SetRadius(itk::Size<2u>&)’
/usr/include/InsightToolkit-4.0/Common/itkNeighborhood.txx:92: note:
candidates are: void itk::Neighborhood<TPixel, VDimension,
TAllocator>::SetRadius(const itk::Size<VDimension>&) [with TPixel =
bool, unsigned int VDimension = 3u, TAllocator =
itk::NeighborhoodAllocator<bool>]
/usr/include/InsightToolkit-4.0/Common/itkNeighborhood.h:183: note:
             void itk::Neighborhood<TPixel, VDimension,
TAllocator>::SetRadius(const long unsigned int*) [with TPixel = bool,
unsigned int VDimension = 3u, TAllocator =
itk::NeighborhoodAllocator<bool>]
/usr/include/InsightToolkit-4.0/Common/itkNeighborhood.txx:78: note:
              void itk::Neighborhood<TPixel, VDimension,
TAllocator>::SetRadius(long unsigned int) [with TPixel = bool,
unsigned int VDimension = 3u, TAllocator =
itk::NeighborhoodAllocator<bool>]
/scratch/itk/wrapitk-read-only/obj-x86_64-linux-gnu/Libraries/Base/wrap_itkFlatStructuringElementPython.cpp:5677:
  instantiated from here
/usr/include/InsightToolkit-4.0/Algorithms/itkFlatStructuringElement.txx:109:
error: conversion from ‘itk::FlatStructuringElement<3u>’ to non-scalar
type ‘itk::FlatStructuringElement<2u>’ requested
make[3]: *** [Libraries/Base/CMakeFiles/BasePython.dir/wrap_itkFlatStructuringElementPython.o]
Error 1

Thanks

Michal