[ITK] [ITK-users] Reading a DICOM file in SimpleITK and ITK (spacing error)

[Mustafa Arikan]

Hi Dženan,

this is not the problem because the spacing is not 0. And other 
frameworks like ImageJ can
read the .dcm image and save it as a .mhd image.

best regards,
Mustafa

Am 10/24/2016 um 5:01 PM schrieb Dženan Zukić:
> Hi Mustafa,
>
> since the offending .dcm is in folder "exports", I assume some tool's 
> DICOM export is broken. Spacing should never be 0. If spacing is not 
> known, it should be set to 1. ITK has a right to complain about this. 
> Can you re-export this file, and perhaps fiddle with export settings a 
> bit?
>
> Regards,
> Dženan
>
> On Mon, Oct 24, 2016 at 6:02 AM, Mustafa Arikan <mustafa at inode.at 
> <mailto:mustafa at inode.at>> wrote:
>
>     Dear all,
>
>     reading a DICOM file (.dcm) in SimpleITK leads to following problem:
>
>>     RuntimeError: Exception thrown in SimpleITK ReadImage:
>>     c:\d\vs9-pkg\simpleitk-build\itk\modules\core\common\include\itkImageBase.hxx:192:
>>     itk::ERROR: Image(00000000163F8ED0): A spacing of 0 is not
>>     allowed: Spacing is [0, 0, 1]
>
>     The code looks like this:
>
>>     import SimpleITK
>>
>>     inputFileName =
>>     "D:\\workspace\\exports\\51871876-25-ARTGGEANMAADQAAVSEGAJEAMD+BWSTZRRGTFTMNECYDQVUXOXNNVNTRZVWGHRLQ+TNXWEN\\bscan.dcm"
>>     reader = SimpleITK.ImageSeriesReader()
>>     image= SimpleITK.ReadImage(inputFileName)
>>     reader.SetFileName ( inputFileName )
>>     imageIn = reader.Execute()
>
>     And I am getting the same error within ITK.
>
>     But opening the .dcm file with some DICOM-Viewer works.
>
>
>     thanks in advance,
>     Mustafa
>
>
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