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<div class="moz-cite-prefix">Hi Dženan,<br>
<br>
this is not the problem because the spacing is not 0. And other
frameworks like ImageJ can<br>
read the .dcm image and save it as a .mhd image.<br>
<br>
best regards,<br>
Mustafa<br>
<br>
Am 10/24/2016 um 5:01 PM schrieb Dženan Zukić:<br>
</div>
<blockquote
cite="mid:CAPf2UMShOEXkZ1hRWrU6icUaoM+g+QPj5K5_A_tJdQKOqHfe-g@mail.gmail.com"
type="cite">
<div dir="ltr">
<div class="gmail_default"
style="font-family:verdana,sans-serif;font-size:small">Hi
Mustafa,</div>
<div class="gmail_default"
style="font-family:verdana,sans-serif;font-size:small"><br>
</div>
<div class="gmail_default"
style="font-family:verdana,sans-serif;font-size:small">since
the offending .dcm is in folder "exports", I assume some
tool's DICOM export is broken. Spacing should never be 0. If
spacing is not known, it should be set to 1. ITK has a right
to complain about this. Can you re-export this file, and
perhaps fiddle with export settings a bit?</div>
<div class="gmail_default"
style="font-family:verdana,sans-serif;font-size:small"><br>
</div>
<div class="gmail_default"
style="font-family:verdana,sans-serif;font-size:small">Regards,</div>
<div class="gmail_default"
style="font-family:verdana,sans-serif;font-size:small">Dženan</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Mon, Oct 24, 2016 at 6:02 AM,
Mustafa Arikan <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:mustafa@inode.at" target="_blank">mustafa@inode.at</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<p>Dear all,</p>
<p>reading a DICOM file (.dcm) in SimpleITK leads to
following problem:</p>
<p> </p>
<blockquote type="cite">RuntimeError: Exception thrown in
SimpleITK ReadImage:
c:\d\vs9-pkg\simpleitk-build\<wbr>itk\modules\core\common\<wbr>include\itkImageBase.hxx:192:<br>
itk::ERROR: Image(00000000163F8ED0): A spacing of 0 is
not allowed: Spacing is [0, 0, 1]</blockquote>
<img src="cid:part2.9F873CC4.9FDFB843@inode.at" alt="">
<p>The code looks like this:</p>
<p> </p>
<blockquote type="cite">import SimpleITK<br>
<br>
inputFileName =
"D:\\workspace\\exports\\<wbr>51871876-25-<wbr>ARTGGEANMAADQAAVSEGAJEAMD+<wbr>BWSTZRRGTFTMNECYDQVUXOXNNVNTRZ<wbr>VWGHRLQ+TNXWEN\\bscan.dcm"<br>
reader = SimpleITK.ImageSeriesReader()<br>
image= SimpleITK.ReadImage(<wbr>inputFileName)<br>
reader.SetFileName ( inputFileName )<br>
imageIn = reader.Execute()</blockquote>
<p>And I am getting the same error within ITK.</p>
<p>But opening the .dcm file with some DICOM-Viewer works.</p>
<p><br>
</p>
<p>thanks in advance,<br>
Mustafa<br>
</p>
</div>
<br>
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