[ITK] exporting MHD to DICOM RT

[Andras Lasso]

I’m not sure if it helps, but you create DICOM-RT structure sets (RTSTRUCT) from labelmaps using 3D Slicer’s DICOM module and the SlicerRT extension.

www.slicerrt.org<http://www.slicerrt.org>
https://www.slicer.org/wiki/Documentation/Nightly/Modules/DICOM#DICOM_export

Andras

From: Community [mailto:community-bounces at itk.org] On Behalf Of Amber Simpson
Sent: November 21, 2016 12:18
To: community at itk.org
Subject: [ITK] exporting MHD to DICOM RT

Hi All,

I have 200 images and segmented masks in MHD format that I would like to export to DICOM RT for sharing on The Cancer Imaging Archive. There is a publication that covers this topic, but the code appears to be restricted to ITK 3.10. The issues I encountered while compiling on Ubuntu 16.04 and OS X 10.9.5 are detailed below.

The paper and source code:
http://www.insight-journal.org/browse/publication/316

Any help would be greatly appreciated. I'm open to other approaches as well.

Thanks,
Amber



---------------------


Compile error on the RTSTRUCT code with ITK 4.10:


[ 50%] Building CXX object CMakeFiles/export2RTSTRUCT.dir/export2RTSTRUCT.cxx.o

In file included from /Users/simpsonl/Dropbox/Liver/src/RTSTRUCT/export2RTSTRUCT.cxx:8:

/Users/simpsonl/Dropbox/Liver/src/RTSTRUCT/itkRTSTRUCTIO.h:28:10: fatal error:

      'gdcmSeqEntry.h' file not found

#include "gdcmSeqEntry.h"

         ^

There is a bug report discussed here:
http://public.kitware.com/pipermail/insight-users/2009-April/029900.html


The error is apparently solved by reverting to ITK 3.10. Unfortunately, ITK 3.10 is not compiling on either workstation. This is the compile error with ITK 3.10 on OS X (Ubuntu was similarly problematic):


/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:668:1: note:

      candidate function

abs(long double __x) _NOEXCEPT {return fabsl(__x);}

^

27 warnings and 4 errors generated.

This is apparently solvable with ITK 4:

https://itk.org/pipermail/insight-users/2015-March/051696.html

and the cycle continues ...



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