[ITK] exporting MHD to DICOM RT

[Dženan Zukić]

Hi Amber,

what you can try to do is use ITK 3.20.1
<http://sourceforge.net/projects/itk/files/itk/3.20/InsightToolkit-3.20.1.tar.gz/download>,
which is much more similar to v3.10 than ITK 4 is. Another solution for
one-off conversion is usage of SlicerRT <http://slicerrt.github.io/>.

Regards,
Dženan

On Mon, Nov 21, 2016 at 12:17 PM, Amber Simpson <simpsona at gmail.com> wrote:

> Hi All,
>
> I have 200 images and segmented masks in MHD format that I would like to
> export to DICOM RT for sharing on The Cancer Imaging Archive. There is a
> publication that covers this topic, but the code appears to be restricted
> to ITK 3.10. The issues I encountered while compiling on Ubuntu 16.04 and
> OS X 10.9.5 are detailed below.
>
> The paper and source code:
> http://www.insight-journal.org/browse/publication/316
>
> Any help would be greatly appreciated. I'm open to other approaches as
> well.
>
> Thanks,
> Amber
>
>
>
> ---------------------
>
>
> Compile error on the RTSTRUCT code with ITK 4.10:
>
> [ 50%] Building CXX object CMakeFiles/export2RTSTRUCT.dir
> /export2RTSTRUCT.cxx.o
>
> In file included from /Users/simpsonl/Dropbox/Liver/
> src/RTSTRUCT/export2RTSTRUCT.cxx:8:
>
> */Users/simpsonl/Dropbox/Liver/src/RTSTRUCT/itkRTSTRUCTIO.h:28:10: **fatal
> error: *
>
> *      'gdcmSeqEntry.h' file not found*
>
> #include "gdcmSeqEntry.h"
>
> *         ^*
>
> There is a bug report discussed here:
> http://public.kitware.com/pipermail/insight-users/2009-April/029900.html
>
>
> The error is apparently solved by reverting to ITK 3.10. Unfortunately,
> ITK 3.10 is not compiling on either workstation. This is the compile error
> with ITK 3.10 on OS X (Ubuntu was similarly problematic):
>
> */Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:668:1:
> note: *
>
>       candidate function
>
> abs(long double __x) _NOEXCEPT {return fabsl(__x);}
>
> *^*
>
> 27 warnings and 4 errors generated.
>
> This is apparently solvable with ITK 4:
>
> https://itk.org/pipermail/insight-users/2015-March/051696.html
>
> and the cycle continues ...
>
>
>
>
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>
>
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