[ITK] Problem with installing ITKApplications
Dženan Zukić
dzenanz at gmail.com
Tue Mar 29 10:56:59 EDT 2016
Hi Sara,
besides noticing that all the linking errors are related to OpenGL, I am
afraid I cannot offer much help. ITKApplications are being abandoned, one
of the bigger reasons being their reliance on FLTK. ITK-SNAP
<http://www.itksnap.org/> has has become standalone application and has
switched to Qt. Maybe Matt can offer some more useful advice.
Regards,
Dženan
On Sun, Mar 27, 2016 at 12:36 PM, Sara Gh <sg.ele.eng at gmail.com> wrote:
> Bill,
>
> Thank you for your reply.
> I tried CMake (3.5); Apparently, the problem has been resolved. Now, I'm
> getting new errors :(
>
> ...
>
> [ 40%] Built target ITKFltkImageViewer
>
> [ 40%] *Linking CXX executable DistanceMapFilter*
>
> Undefined symbols for architecture x86_64:
>
> "_aglChoosePixelFormat", referenced from:
>
> Fl_Gl_Choice::find(int, int const*) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglCreateContext", referenced from:
>
> fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglDestroyContext", referenced from:
>
> fl_delete_gl_context(__AGLContextRec*) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglEnable", referenced from:
>
> Fl_Gl_Window::make_current() in libfltk_gl.a(Fl_Gl_Window.cxx.o)
>
> fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglGetCurrentContext", referenced from:
>
> fl_no_gl_context() in libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglSetCurrentContext", referenced from:
>
> fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> fl_no_gl_context() in libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglSetInteger", referenced from:
>
> Fl_Gl_Window::make_current() in libfltk_gl.a(Fl_Gl_Window.cxx.o)
>
> fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglSetWindowRef", referenced from:
>
> fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
> libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> fl_no_gl_context() in libfltk_gl.a(Fl_Gl_Choice.cxx.o)
>
> "_aglSwapBuffers", referenced from:
>
> Fl_Gl_Window::swap_buffers() in libfltk_gl.a(Fl_Gl_Window.cxx.o)
>
> "_aglUpdateContext", referenced from:
>
> Fl_Gl_Window::resize(int, int, int, int) in
> libfltk_gl.a(Fl_Gl_Window.cxx.o)
>
> ld: symbol(s) not found for architecture x86_64
>
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
>
> make[5]: *** [DistanceMapFilter/DistanceMapFilter] Error 1
>
> make[4]: *** [DistanceMapFilter/CMakeFiles/DistanceMapFilter.dir/all]
> Error 2
>
> make[3]: *** [all] Error 2
>
> make[2]: *** [ITKApps-prefix/src/ITKApps-stamp/ITKApps-build] Error 2
>
> make[1]: *** [CMakeFiles/ITKApps.dir/all] Error 2
>
> make: *** [all] Error 2
>
>
> I would be thankful if someone could help me with these errors! I am using
> Superbuild on Mac.
>
>
> Thanks,
>
> Sara Gh.
>
> On Tue, Mar 15, 2016 at 9:28 AM, Dženan Zukić <dzenanz at gmail.com> wrote:
>
>> Perhaps you should also try an older version which supports "SOURCE
>> signatures of add_custom_command".
>>
>> On Tue, Mar 15, 2016 at 9:26 AM, Dženan Zukić <dzenanz at gmail.com> wrote:
>>
>>> Hi Sara,
>>>
>>> by looking at your build log, I noticed the following:
>>>
>>> The SOURCE signatures of add_custom_command are no longer supported.
>>> Call Stack (most recent call first):
>>> ImageColorViewer/CMakeLists.txt:37 (ADD_GUI_EXECUTABLE)
>>> This warning is for project developers. Use -Wno-dev to suppress it.
>>> CMake Internal Error (please report a bug):
>>> Missing cmGeneratorTarget instance!
>>>
>>> Please try with newest version of CMake (3.5), and if it does not help
>>> then report <https://cmake.org/Bug/bug_report_page.php> the bug to
>>> CMake developers.
>>>
>>> HTH,
>>> Dženan
>>>
>>> On Sun, Mar 13, 2016 at 4:14 AM, Sara Gh <sg.ele.eng at gmail.com> wrote:
>>>
>>>> Okay! I found the solution for the previous problem here
>>>> <https://github.com/Homebrew/homebrew/issues/41581>! So, in fl_line_style.cxx,
>>>> I changed all
>>>> static enum CGLineCap fl_quartz_line_cap_ = kCGLineCapButt;
>>>> To:
>>>> static /*enum*/ CGLineCap fl_quartz_line_cap_ = kCGLineCapButt;
>>>>
>>>> Then, I came accross to another error. Fl_Type.h. I found the solution
>>>> here <https://github.com/Homebrew/homebrew/issues/27404> and fixed the
>>>> issue by changing:
>>>>
>>>> friend Fl_Widget *make_type_browser(int,int,int,int,const char *l=0);
>>>>
>>>> to
>>>>
>>>> friend Fl_Widget *make_type_browser(int,int,int,int,const char *);
>>>>
>>>> Now, I am getting another error (please see attached file):
>>>>
>>>> /bin/sh: line 1: 57588 Segmentation fault: 11
>>>> /Volumes/cmake-3.4.1-Darwin-x86_64/CMake.app/Contents/bin/cmake
>>>> -DCMAKE_BUILD_TYPE:STRING=
>>>> -DCMAKE_CXX_COMPILER:PATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
>>>> -DCMAKE_CXX_FLAGS:STRING=
>>>> -DCMAKE_C_COMPILER:PATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
>>>> -DCMAKE_C_FLAGS:STRING= -DCMAKE_EXE_LINKER_FLAGS:STRING=
>>>> "-DCMAKE_GENERATOR:STRING=Unix Makefiles" -DCMAKE_EXTRA_GENERATOR:STRING=
>>>> -DCMAKE_OSX_ARCHITECTURES:STRING= -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING=
>>>> -DCMAKE_OSX_SYSROOT:PATH= -DBUILD_SHARED_LIBS:BOOL=FALSE
>>>> -DITK_DIR:PATH=/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/ITK-build
>>>> -DUSE_VTK:BOOL=ON
>>>> -DVTK_DIR:PATH=/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/VTK-build
>>>> -DUSE_FLTK:BOOL=ON
>>>> -DFLTK_DIR:PATH=/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK-install/FLTK/.framework/Resources/CMake
>>>> -DITK_FLTK_RESOURCE:FILEPATH=Carbon.r "-GUnix Makefiles"
>>>> /Volumes/Academic/ITKVTK/Applications/ITKApps/Superbuild/..
>>>> make[2]: *** [ITKApps-prefix/src/ITKApps-stamp/ITKApps-configure] Error
>>>> 139
>>>> make[1]: *** [CMakeFiles/ITKApps.dir/all] Error 2
>>>> make: *** [all] Error 2
>>>>
>>>>
>>>> I would be very thankful if you could help me with this problem.
>>>>
>>>> Thanks,
>>>> Sara
>>>>
>>>>
>>>>
>>>> On Sun, Mar 13, 2016 at 12:51 AM, Sara Gh <sg.ele.eng at gmail.com> wrote:
>>>> Thank you for your reply. Actually, I tried building ITK Apps
>>>> Superbuild. It also ends with some errors:
>>>> "4 errors generated.
>>>> make[5]: *** [src/CMakeFiles/fltk.dir/fl_line_style.cxx.o] Error 1
>>>> make[4]: *** [src/CMakeFiles/fltk.dir/all] Error 2
>>>> make[3]: *** [all] Error 2
>>>> make[2]: *** [FLTK-prefix/src/FLTK-stamp/FLTK-build] Error 2
>>>> make[1]: *** [CMakeFiles/FLTK.dir/all] Error 2
>>>> make: *** [all] Error 2"
>>>> Please find attached the text file including the errors I got.
>>>>
>>>> Thanks,
>>>> Sara
>>>>
>>>> On Fri, Mar 11, 2016 at 2:03 PM, Bill Lorensen <bill.lorensen at gmail.com
>>>> > wrote:
>>>>
>>>> Please use the ITK Apps superbuild.
>>>> http://www.itk.org/ITK/resources/applications.html
>>>>
>>>> This will build all of the proper vtk,itk,fltk.
>>>>
>>>>
>>>>
>>>> On Fri, Mar 11, 2016 at 1:44 PM, Sara Gh <sg.ele.eng at gmail.com> wrote:
>>>> > Hello ITK experts,
>>>> >
>>>> > I have been trying to make ITK Apps work but I have not been
>>>> successful so
>>>> > far. When I am building (making) ITKApps the process ends with 8
>>>> errors in
>>>> > DICOMApp. I would be thankful if you could help me in this regard. I
>>>> am on
>>>> > Mac (El Capitan) and here is the summary of what I have done so far:
>>>> >
>>>> > 1- Installing CMake-3.4.1.
>>>> > 2- Installing VTK-6.3.0
>>>> > 3- Installing ITK-4.8.2
>>>> > 4- Installing FLTK-1.3.3 (Initially, I had some issues with building
>>>> FLTK
>>>> > and came across to this; and using this solution: brew reinstall
>>>> --devel
>>>> >
>>>> https://raw.githubusercontent.com/dpo/homebrew/ec46018128dde5bf466b013a6c7086d0880930a3/Library/Formula/fltk.rb
>>>> > , I could fix the problem and fltk folder has been created at
>>>> > \usr\local\Cellar\fltk\1.3.3-r10866_1\)
>>>> > 5- Installing ITKApps:
>>>> >
>>>> > - Create a folder named "Applications"
>>>> >
>>>> > - In "Applications" directory run: git clone
>>>> http://itk.org/ITKApps.git
>>>> >
>>>> > -This will make a floder named "ITKApps"
>>>> >
>>>> > - Then, create a folder named "build" in "Applications" directory
>>>> >
>>>> > - Use Cmake gui:
>>>> >
>>>> > * Source: PathTo/Applications/ITKApps
>>>> > * Build: PathTo/Applications/build
>>>> >
>>>> > - Configure! There is a bug: Fltk resources not found, GUI
>>>> application will
>>>> > not respond to mouse events
>>>> >
>>>> > - Manually set the ITK_FLTK_RESOURCE to
>>>> > \usr\local\Cellar\fltk\1.3.3-r10866_1\
>>>> >
>>>> > - Configure again! Successful!
>>>> >
>>>> > - Generate! Successful!
>>>> >
>>>> > - Go to /Applications/build directory, and make.
>>>> >
>>>> > This process ends with 8 errors related to DICOMApp.
>>>> > "8 errors generated.
>>>> > make[2]: *** [DICOMApp/CMakeFiles/DICOMApp.dir/main.cxx.o] Error
>>>> 1make[1]:
>>>> > *** [DICOMApp/CMakeFiles/DICOMApp.dir/all] Error 2
>>>> > make: *** [all] Error 2"
>>>> >
>>>> > Please find attached the text file including the errors I got.
>>>> >
>>>> > Thanks,
>>>> > Sara Gh
>>>> >
>>>> >
>>>> > _______________________________________________
>>>> > Community mailing list
>>>> > Community at itk.org
>>>> > http://public.kitware.com/mailman/listinfo/community
>>>> >
>>>>
>>>>
>>>>
>>>> --
>>>> Unpaid intern in BillsBasement at noware dot com
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Community mailing list
>>>> Community at itk.org
>>>> http://public.kitware.com/mailman/listinfo/community
>>>>
>>>>
>>>
>>
>
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