[ITK] Problem with installing ITKApplications
Sara Gh
sg.ele.eng at gmail.com
Sun Mar 27 12:36:45 EDT 2016
Bill,
Thank you for your reply.
I tried CMake (3.5); Apparently, the problem has been resolved. Now, I'm
getting new errors :(
...
[ 40%] Built target ITKFltkImageViewer
[ 40%] *Linking CXX executable DistanceMapFilter*
Undefined symbols for architecture x86_64:
"_aglChoosePixelFormat", referenced from:
Fl_Gl_Choice::find(int, int const*) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglCreateContext", referenced from:
fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglDestroyContext", referenced from:
fl_delete_gl_context(__AGLContextRec*) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglEnable", referenced from:
Fl_Gl_Window::make_current() in libfltk_gl.a(Fl_Gl_Window.cxx.o)
fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglGetCurrentContext", referenced from:
fl_no_gl_context() in libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglSetCurrentContext", referenced from:
fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
fl_no_gl_context() in libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglSetInteger", referenced from:
Fl_Gl_Window::make_current() in libfltk_gl.a(Fl_Gl_Window.cxx.o)
fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglSetWindowRef", referenced from:
fl_create_gl_context(Fl_Window*, Fl_Gl_Choice const*, int) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
fl_set_gl_context(Fl_Window*, __AGLContextRec*) in
libfltk_gl.a(Fl_Gl_Choice.cxx.o)
fl_no_gl_context() in libfltk_gl.a(Fl_Gl_Choice.cxx.o)
"_aglSwapBuffers", referenced from:
Fl_Gl_Window::swap_buffers() in libfltk_gl.a(Fl_Gl_Window.cxx.o)
"_aglUpdateContext", referenced from:
Fl_Gl_Window::resize(int, int, int, int) in
libfltk_gl.a(Fl_Gl_Window.cxx.o)
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make[5]: *** [DistanceMapFilter/DistanceMapFilter] Error 1
make[4]: *** [DistanceMapFilter/CMakeFiles/DistanceMapFilter.dir/all] Error
2
make[3]: *** [all] Error 2
make[2]: *** [ITKApps-prefix/src/ITKApps-stamp/ITKApps-build] Error 2
make[1]: *** [CMakeFiles/ITKApps.dir/all] Error 2
make: *** [all] Error 2
I would be thankful if someone could help me with these errors! I am using
Superbuild on Mac.
Thanks,
Sara Gh.
On Tue, Mar 15, 2016 at 9:28 AM, Dženan Zukić <dzenanz at gmail.com> wrote:
> Perhaps you should also try an older version which supports "SOURCE
> signatures of add_custom_command".
>
> On Tue, Mar 15, 2016 at 9:26 AM, Dženan Zukić <dzenanz at gmail.com> wrote:
>
>> Hi Sara,
>>
>> by looking at your build log, I noticed the following:
>>
>> The SOURCE signatures of add_custom_command are no longer supported.
>> Call Stack (most recent call first):
>> ImageColorViewer/CMakeLists.txt:37 (ADD_GUI_EXECUTABLE)
>> This warning is for project developers. Use -Wno-dev to suppress it.
>> CMake Internal Error (please report a bug):
>> Missing cmGeneratorTarget instance!
>>
>> Please try with newest version of CMake (3.5), and if it does not help
>> then report <https://cmake.org/Bug/bug_report_page.php> the bug to CMake
>> developers.
>>
>> HTH,
>> Dženan
>>
>> On Sun, Mar 13, 2016 at 4:14 AM, Sara Gh <sg.ele.eng at gmail.com> wrote:
>>
>>> Okay! I found the solution for the previous problem here
>>> <https://github.com/Homebrew/homebrew/issues/41581>! So, in fl_line_style.cxx,
>>> I changed all
>>> static enum CGLineCap fl_quartz_line_cap_ = kCGLineCapButt;
>>> To:
>>> static /*enum*/ CGLineCap fl_quartz_line_cap_ = kCGLineCapButt;
>>>
>>> Then, I came accross to another error. Fl_Type.h. I found the solution
>>> here <https://github.com/Homebrew/homebrew/issues/27404> and fixed the
>>> issue by changing:
>>>
>>> friend Fl_Widget *make_type_browser(int,int,int,int,const char *l=0);
>>>
>>> to
>>>
>>> friend Fl_Widget *make_type_browser(int,int,int,int,const char *);
>>>
>>> Now, I am getting another error (please see attached file):
>>>
>>> /bin/sh: line 1: 57588 Segmentation fault: 11
>>> /Volumes/cmake-3.4.1-Darwin-x86_64/CMake.app/Contents/bin/cmake
>>> -DCMAKE_BUILD_TYPE:STRING=
>>> -DCMAKE_CXX_COMPILER:PATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
>>> -DCMAKE_CXX_FLAGS:STRING=
>>> -DCMAKE_C_COMPILER:PATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
>>> -DCMAKE_C_FLAGS:STRING= -DCMAKE_EXE_LINKER_FLAGS:STRING=
>>> "-DCMAKE_GENERATOR:STRING=Unix Makefiles" -DCMAKE_EXTRA_GENERATOR:STRING=
>>> -DCMAKE_OSX_ARCHITECTURES:STRING= -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING=
>>> -DCMAKE_OSX_SYSROOT:PATH= -DBUILD_SHARED_LIBS:BOOL=FALSE
>>> -DITK_DIR:PATH=/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/ITK-build
>>> -DUSE_VTK:BOOL=ON
>>> -DVTK_DIR:PATH=/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/VTK-build
>>> -DUSE_FLTK:BOOL=ON
>>> -DFLTK_DIR:PATH=/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK-install/FLTK/.framework/Resources/CMake
>>> -DITK_FLTK_RESOURCE:FILEPATH=Carbon.r "-GUnix Makefiles"
>>> /Volumes/Academic/ITKVTK/Applications/ITKApps/Superbuild/..
>>> make[2]: *** [ITKApps-prefix/src/ITKApps-stamp/ITKApps-configure] Error
>>> 139
>>> make[1]: *** [CMakeFiles/ITKApps.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>>
>>> I would be very thankful if you could help me with this problem.
>>>
>>> Thanks,
>>> Sara
>>>
>>>
>>>
>>> On Sun, Mar 13, 2016 at 12:51 AM, Sara Gh <sg.ele.eng at gmail.com> wrote:
>>> Thank you for your reply. Actually, I tried building ITK Apps
>>> Superbuild. It also ends with some errors:
>>> "4 errors generated.
>>> make[5]: *** [src/CMakeFiles/fltk.dir/fl_line_style.cxx.o] Error 1
>>> make[4]: *** [src/CMakeFiles/fltk.dir/all] Error 2
>>> make[3]: *** [all] Error 2
>>> make[2]: *** [FLTK-prefix/src/FLTK-stamp/FLTK-build] Error 2
>>> make[1]: *** [CMakeFiles/FLTK.dir/all] Error 2
>>> make: *** [all] Error 2"
>>> Please find attached the text file including the errors I got.
>>>
>>> Thanks,
>>> Sara
>>>
>>> On Fri, Mar 11, 2016 at 2:03 PM, Bill Lorensen <bill.lorensen at gmail.com>
>>> wrote:
>>>
>>> Please use the ITK Apps superbuild.
>>> http://www.itk.org/ITK/resources/applications.html
>>>
>>> This will build all of the proper vtk,itk,fltk.
>>>
>>>
>>>
>>> On Fri, Mar 11, 2016 at 1:44 PM, Sara Gh <sg.ele.eng at gmail.com> wrote:
>>> > Hello ITK experts,
>>> >
>>> > I have been trying to make ITK Apps work but I have not been
>>> successful so
>>> > far. When I am building (making) ITKApps the process ends with 8
>>> errors in
>>> > DICOMApp. I would be thankful if you could help me in this regard. I
>>> am on
>>> > Mac (El Capitan) and here is the summary of what I have done so far:
>>> >
>>> > 1- Installing CMake-3.4.1.
>>> > 2- Installing VTK-6.3.0
>>> > 3- Installing ITK-4.8.2
>>> > 4- Installing FLTK-1.3.3 (Initially, I had some issues with building
>>> FLTK
>>> > and came across to this; and using this solution: brew reinstall
>>> --devel
>>> >
>>> https://raw.githubusercontent.com/dpo/homebrew/ec46018128dde5bf466b013a6c7086d0880930a3/Library/Formula/fltk.rb
>>> > , I could fix the problem and fltk folder has been created at
>>> > \usr\local\Cellar\fltk\1.3.3-r10866_1\)
>>> > 5- Installing ITKApps:
>>> >
>>> > - Create a folder named "Applications"
>>> >
>>> > - In "Applications" directory run: git clone
>>> http://itk.org/ITKApps.git
>>> >
>>> > -This will make a floder named "ITKApps"
>>> >
>>> > - Then, create a folder named "build" in "Applications" directory
>>> >
>>> > - Use Cmake gui:
>>> >
>>> > * Source: PathTo/Applications/ITKApps
>>> > * Build: PathTo/Applications/build
>>> >
>>> > - Configure! There is a bug: Fltk resources not found, GUI application
>>> will
>>> > not respond to mouse events
>>> >
>>> > - Manually set the ITK_FLTK_RESOURCE to
>>> > \usr\local\Cellar\fltk\1.3.3-r10866_1\
>>> >
>>> > - Configure again! Successful!
>>> >
>>> > - Generate! Successful!
>>> >
>>> > - Go to /Applications/build directory, and make.
>>> >
>>> > This process ends with 8 errors related to DICOMApp.
>>> > "8 errors generated.
>>> > make[2]: *** [DICOMApp/CMakeFiles/DICOMApp.dir/main.cxx.o] Error
>>> 1make[1]:
>>> > *** [DICOMApp/CMakeFiles/DICOMApp.dir/all] Error 2
>>> > make: *** [all] Error 2"
>>> >
>>> > Please find attached the text file including the errors I got.
>>> >
>>> > Thanks,
>>> > Sara Gh
>>> >
>>> >
>>> > _______________________________________________
>>> > Community mailing list
>>> > Community at itk.org
>>> > http://public.kitware.com/mailman/listinfo/community
>>> >
>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>>
>>>
>>>
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>>>
>>>
>>
>
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