[ITK] [ITK-users] itk::MRIBiasFieldCorrectionFilter

[Dženan Zukić]

Hi Muhammad,

after a quick glance at the source code, the class expects
SetTissueClassStatistics() to be called, with arrays of mean values and
standard deviations of tissues of interest. You should probably read
the referenced
paper <http://www.sci.utah.edu/~gerig/publications/TMI00-Styner-Bias.pdf>
to figure out how to do that.

Regards

On Fri, Jan 8, 2016 at 10:17 AM, Jawad, Muhammad <
m.jawad at jacobs-university.de> wrote:

> it give error,
>
> itk::ExceptionObject (0044B814)
> Location: "unknown"
> File: c:\program files
> (x86)\itk\include\itk-4.7\itkMRIBiasFieldCorrectionFilter.hxx
> Line: 595
> Description: itk::ERROR: MRIBiasFieldCorrectionFilter(0952CD98): Tissue
> Class Means is empty
>
> Any one know the complete pipeline for this algorithm ?
>
> --
> Muhammad Jawad
> PhD Student Computer Science
> School of Engineering and Science
>
> Telephone: +49 421 200-3182
> Fax: +49 421 200-3103
> Office: Research I, Room 119
>
> Mailing Address:
> Jacobs University Bremen gGmbH
> Campus Ring 1
> 28759 Bremen
> Germany
> ________________________________________
> From: Jawad, Muhammad
> Sent: Friday, January 08, 2016 4:12 PM
> To: Dženan Zukić
> Cc: insight-users at itk.org
> Subject: RE: [ITK-users] itk::MRIBiasFieldCorrectionFilter
>
> Dear Dženan
>
> I tried in this way but it is not working.
>
> As itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage,
> TMaskImage > take three arguments,
>
> How we define the mask image ?
>
> --
> Muhammad Jawad
> PhD Student Computer Science
> School of Engineering and Science
>
> Telephone: +49 421 200-3182
> Fax: +49 421 200-3103
> Office: Research I, Room 119
>
> Mailing Address:
> Jacobs University Bremen gGmbH
> Campus Ring 1
> 28759 Bremen
> Germany
> ________________________________________
> From: Dženan Zukić [dzenanz at gmail.com]
> Sent: Friday, January 08, 2016 2:12 PM
> To: Jawad, Muhammad
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] itk::MRIBiasFieldCorrectionFilter
>
> Hi Muhammad,
>
> it looks to be a case of the simplest 1 input 1 output filter. Pseudocode:
>
> read3Dimage();
> MRIbfcFilter->SetInput(image3D);
> MRIbfcFilter->Update();
> corrected3Dimage=MRIbfcFilter->GetOutput();
>
> HTH,
> Dženan (جنان)
>
> On Wed, Jan 6, 2016 at 8:25 AM, Jawad, Muhammad <
> m.jawad at jacobs-university.de<mailto:m.jawad at jacobs-university.de>> wrote:
>
> Dear Itk User,
>
> I am looking for some example about the usage pipeline of
> itk::MRIBiasFieldCorrectionFilter for dicom images.
>
> If some body know or has already worked on it, kinldy share it by the toy
> example.
>
>
>
>
> --
> Muhammad Jawad
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