[ITK] Compilation problems

Tue Jun 2 02:08:11 EDT 2015

Hello. My antivrus system is Avast and I use the CMake 3.2.2 version

On Tue, Jun 2, 2015 at 2:31 AM, Andras Lasso <lasso at queensu.ca> wrote:
> What antivirus software do you use?
> What CMake version do you use?
>
> File locking errors are often stochastic in nature, and once something is
> compiled or linked it does not have to be generated again, so if you restart
> the build a few times (without changing anything) the process may complete
> successfully.
>
> Andras
> ________________________________
> From: Constantinus Spanakis
> Sent: ‎2015-‎06-‎01 18:01
> To: Andras Lasso
> Cc: Matt McCormick; community at itk.org
>
> Subject: Re: [ITK] Compilation problems
>
> Hello. I did disable the antivirus from checking the Binary folder
> where the ITK.sln is being compiled.There are less mistakes.
>
> Error 9 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmp9543edf29f494ce2a5acca5a3439e8b4.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ImageRegistration19
> Error 10 error LNK1109: cannot remove file
> 'C:\Users\kospanak\AppData\Local\Temp\lnk83E.tmp'
> C:\ITK_BIN\Examples\IO\LINK ImageReadExtractFilterInsertWrite
> Error 11 error MSB6006: "link.exe" exited with code 1109. C:\Program
> Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targets
> 272 6 ImageReadExtractFilterInsertWrite
> Error 12 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmp6fa8b0a138a6425a95a105db11db5372.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ImageReadExportVTK
> Error 13 error LNK1109: cannot remove file
> 'C:\Users\kospanak\AppData\Local\Temp\lnk3CA6.tmp'
> C:\ITK_BIN\Examples\Iterators\LINK ImageLinearIteratorWithIndex2
> Error 14 error MSB6006: "link.exe" exited with code 1109. C:\Program
> Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targets
> 272 6 ImageLinearIteratorWithIndex2
> Error 15 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmpf6a1e74488a54c008376d48bb43f0377.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ITKNarrowBand-all
> Error 16 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmp7b6f66bb5c264478b83874545e96d1d0.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ITKJPEG-all
> Error 17 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmp6f078dd203fd4f5a982672178d2d0551.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ITKImageFusion-all
> Error 18 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmp32346c41a6a64718899181bd536cb633.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ITKEigen-all
> Error 19 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmpe507548730c7498aabba1d9fae8a7b95.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> ITKColormap-all
> Error 20 error LNK1109: cannot remove file
> 'C:\Users\kospanak\AppData\Local\Temp\lnk14DC.tmp'
> C:\ITK_BIN\Examples\Statistics\LINK GaussianMembershipFunction
> Error 23 error MSB4018: The "CustomBuild" task failed unexpectedly.
> System.IO.IOException: The process cannot access the file
> 'C:\Users\kospanak\AppData\Local\Temp\tmp555f0829540c4461a0d56eac5398296e.cmd'
> because it is being used by another process.
>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>    at System.IO.File.Delete(String path)
>    at Microsoft.Build.Utilities.ToolTask.Execute()
>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>    at
> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>    at
> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
> C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
> BSplineWarping1
>
>
>
> On Mon, Jun 1, 2015 at 6:10 PM, Andras Lasso <lasso at queensu.ca> wrote:
>>> Windows is limited to only allowing one program to open a file at a time
>>
>> None of the desktop operating systems have such limitations nowadays. You
>> can deny read/write access for other processes if you want to - and maybe
>> some antivirus software does that - but it's not very likely.
>>
>> There have been some issues in CMake deleting a file and then immediately
>> opening it while doing many try-compile tests in a row, but it was fixed a
>> few years ago (http://www.cmake.org/Bug/view.php?id=12957). I haven't
>> experienced conflicts with anti-virus, file sharing (dropbox, onedrive,
>> etc), or desktop search indexers since then.
>>
>> You can use utilities such as LockHunter to find out what's locking a
>> particular file.
>>
>> Andras
>>
>> -----Original Message-----
>> From: Community [mailto:community-bounces at itk.org] On Behalf Of Matt
>> McCormick
>> Sent: Monday, June 1, 2015 9:50 AM
>> To: Constantinus Spanakis
>> Cc: community at itk.org
>> Subject: Re: [ITK] Compilation problems
>>
>> Hi Constantinus,
>>
>> Welcome to ITK!
>>
>> You may need to disable anti-malware programs, at least for the used
>> directories.  Visual Studio and anti-malware programs can compete over
>> opening files, and Windows is limited to only allowing one program to open a
>> file at a time.
>>
>> Hope this helps,
>> Matt
>>
>> On Mon, Jun 1, 2015 at 4:42 AM, Constantinus Spanakis
>> <c.spanakis83 at gmail.com> wrote:
>>> Hello. I am new in ITK and i have problem in compiling the ITK.sln in
>>> VisualStudio2010. The errors i get are the following ones:
>>>
>>> Error 1 error LNK1168: cannot open
>>> C:\ITK_BIN\bin\Debug\ITK_bld_internal_H5detect.exe for writing
>>> C:\ITK_BIN\Modules\ThirdParty\HDF5\src\itkhdf5\src\LINK
>>> ITK_bld_internal_H5detect
>>> Error 11 error MSB4018: The "CustomBuild" task failed unexpectedly.
>>> System.IO.IOException: The process cannot access the file
>>>
>>> 'C:\Users\kospanak\AppData\Local\Temp\tmpc1f187af264245a691848e5f03846a55.cmd'
>>> because it is being used by another process.
>>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>>    at System.IO.File.Delete(String path)
>>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>>> eNext()
>>> C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>>> ITKQuadEdgeMeshFiltering-all Error 15 error MSB4018: The "CustomBuild"
>>> task failed unexpectedly.
>>> System.IO.IOException: The process cannot access the file
>>>
>>> 'C:\Users\kospanak\AppData\Local\Temp\tmp3b81f281da7445e2bbcd68bf3300b50e.cmd'
>>> because it is being used by another process.
>>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>>    at System.IO.File.Delete(String path)
>>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>>> eNext()
>>> C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>>> ITKImageFunction-all Error 38 error MSB6003: The specified task
>>> executable "link.exe" could not be run. The process cannot access the
>>> file
>>>
>>> 'C:\ITK_BIN\Examples\Filtering\RGBToGrayscale.dir\Debug\link.write.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 272 6 RGBToGrayscale
>>> Error 39 error MSB6003: The specified task executable "mt.exe" could
>>> not be run. The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\Filtering\OtsuThresholdImageFilter.dir\Debug\mt.write.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 574 6
>>> OtsuThresholdImageFilter Error 40 error LNK1104: cannot open file
>>> 'C:\ITK_BIN\bin\Debug\NeighborhoodIterators4.exe'
>>> C:\ITK_BIN\Examples\Iterators\LINK NeighborhoodIterators4 Error 42
>>> error LNK1168: cannot open
>>> C:\ITK_BIN\bin\Debug\MorphologicalImageEnhancement.exe for writing
>>> C:\ITK_BIN\Examples\Filtering\LINK MorphologicalImageEnhancement Error
>>> 43 error MSB6003: The specified task executable "CL.exe" could not be
>>> run. The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\SpatialObjects\MeshSpatialObject.dir\Debug\cl.read.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 152 6 MeshSpatialObject
>>> Error 44 error LNK1104: cannot open file
>>> 'C:\ITK_BIN\bin\Debug\Mesh1.exe'
>>> C:\ITK_BIN\Examples\DataRepresentation\Mesh\LINK Mesh1 Error 45 error
>>> MSB6003: The specified task executable "link.exe" could not be run.
>>> The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\DataRepresentation\Mesh\Mesh2.dir\Debug\link-cvtres.read.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 396 6 Mesh2
>>> Error 46 error MSB6003: The specified task executable "link.exe" could
>>> not be run. The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\RegistrationITKv4\MeanSquaresImageMetric1.dir\Debug\link-cvtres.read.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 272 6 MeanSquaresImageMetric1
>>> Error 47 error FTK1011: δεν ήταν δυνατή η δημιουργία του νέου αρχείου
>>> καταγραφής παρακολούθησης αρχείων:
>>>
>>> C:\ITK_BIN\Examples\Filtering\LaplacianImageFilter.dir\Debug\link.read.1.tlog.
>>> Το αρχείο υπάρχει. C:\ITK_BIN\Examples\Filtering\FileTracker
>>> LaplacianImageFilter
>>> Error 48 error MSB4018: The "CustomBuild" task failed unexpectedly.
>>> System.IO.IOException: The process cannot access the file
>>>
>>> 'C:\Users\kospanak\AppData\Local\Temp\tmp3e8036cb67934ab4a2ecd9c93a50d2bc.cmd'
>>> because it is being used by another process.
>>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>>    at System.IO.File.Delete(String path)
>>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>>> eNext()
>>> C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>>> ImageRegistrationHistogramPlotter Error 49 error MSB6003: The
>>> specified task executable "link.exe" could not be run. The process
>>> cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\RegistrationITKv4\ImageRegistration18.dir\Debug\link.write.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 272 6 ImageRegistration18
>>> Error 50 error MSB6003: The specified task executable "rc.exe" could
>>> not be run. The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\RegistrationITKv4\ImageRegistration2.dir\Debug\rc.read.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 620 6
>>> ImageRegistration2
>>> Error 51 error MSB6003: The specified task executable "link.exe" could
>>> not be run. The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\RegistrationITKv4\ImageRegistration13.dir\Debug\link.write.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 396 6 ImageRegistration13
>>> Error 53 error MSB4018: The "CustomBuild" task failed unexpectedly.
>>> System.IO.IOException: The process cannot access the file
>>>
>>> 'C:\Users\kospanak\AppData\Local\Temp\tmpb55c8d25ab614f5693d8faff51099a11.cmd'
>>> because it is being used by another process.
>>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>>    at System.IO.File.Delete(String path)
>>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>>    at
>>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>>> eNext()
>>> C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>>> ImageAdaptor2
>>> Error 54 error LNK1104: cannot open file
>>> 'C:\ITK_BIN\bin\Debug\DeformableRegistration3.exe'
>>> C:\ITK_BIN\Examples\RegistrationITKv4\LINK DeformableRegistration3
>>> Error 55 error MSB6003: The specified task executable "link.exe" could
>>> not be run. The process cannot access the file
>>>
>>> 'C:\ITK_BIN\Examples\RegistrationITKv4\DeformableRegistration11.dir\Debug\link.7924.write.1.tlog'
>>> because it is being used by another process. C:\Program Files
>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>>> ts
>>> 396 6 DeformableRegistration11
>>> Error 57 error LNK1104: cannot open file
>>> 'C:\ITK_BIN\bin\Debug\CellularSegmentation2.exe'
>>> C:\ITK_BIN\Examples\Segmentation\LINK CellularSegmentation2 Error 59
>>> error LNK1104: cannot open file
>>> 'C:\ITK_BIN\bin\Debug\BinaryMinMaxCurvatureFlowImageFilter.exe'
>>> C:\ITK_BIN\Examples\Filtering\LINK
>>> BinaryMinMaxCurvatureFlowImageFilter
>>> Error 60 error LNK1168: cannot open
>>> C:\ITK_BIN\bin\Debug\BayesianClassifier.exe for writing
>>> C:\ITK_BIN\Examples\Statistics\LINK BayesianClassifier
>>>
>>> What could be the problem?
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community