[ITK] Compilation problems

Mon Jun 1 19:31:13 EDT 2015

What antivirus software do you use?
What CMake version do you use?

File locking errors are often stochastic in nature, and once something is compiled or linked it does not have to be generated again, so if you restart the build a few times (without changing anything) the process may complete successfully.

Andras
________________________________
From: Constantinus Spanakis<mailto:c.spanakis83 at gmail.com>
Sent: ‎2015-‎06-‎01 18:01
To: Andras Lasso<mailto:lasso at queensu.ca>
Cc: Matt McCormick<mailto:matt.mccormick at kitware.com>; community at itk.org<mailto:community at itk.org>
Subject: Re: [ITK] Compilation problems

Hello. I did disable the antivirus from checking the Binary folder
where the ITK.sln is being compiled.There are less mistakes.

Error 9 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmp9543edf29f494ce2a5acca5a3439e8b4.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ImageRegistration19
Error 10 error LNK1109: cannot remove file
'C:\Users\kospanak\AppData\Local\Temp\lnk83E.tmp'
C:\ITK_BIN\Examples\IO\LINK ImageReadExtractFilterInsertWrite
Error 11 error MSB6006: "link.exe" exited with code 1109. C:\Program
Files (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targets
272 6 ImageReadExtractFilterInsertWrite
Error 12 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmp6fa8b0a138a6425a95a105db11db5372.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ImageReadExportVTK
Error 13 error LNK1109: cannot remove file
'C:\Users\kospanak\AppData\Local\Temp\lnk3CA6.tmp'
C:\ITK_BIN\Examples\Iterators\LINK ImageLinearIteratorWithIndex2
Error 14 error MSB6006: "link.exe" exited with code 1109. C:\Program
Files (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targets
272 6 ImageLinearIteratorWithIndex2
Error 15 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmpf6a1e74488a54c008376d48bb43f0377.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ITKNarrowBand-all
Error 16 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmp7b6f66bb5c264478b83874545e96d1d0.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ITKJPEG-all
Error 17 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmp6f078dd203fd4f5a982672178d2d0551.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ITKImageFusion-all
Error 18 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmp32346c41a6a64718899181bd536cb633.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ITKEigen-all
Error 19 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmpe507548730c7498aabba1d9fae8a7b95.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
ITKColormap-all
Error 20 error LNK1109: cannot remove file
'C:\Users\kospanak\AppData\Local\Temp\lnk14DC.tmp'
C:\ITK_BIN\Examples\Statistics\LINK GaussianMembershipFunction
Error 23 error MSB4018: The "CustomBuild" task failed unexpectedly.
System.IO.IOException: The process cannot access the file
'C:\Users\kospanak\AppData\Local\Temp\tmp555f0829540c4461a0d56eac5398296e.cmd'
because it is being used by another process.
   at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
   at System.IO.File.InternalDelete(String path, Boolean checkHost)
   at System.IO.File.Delete(String path)
   at Microsoft.Build.Utilities.ToolTask.Execute()
   at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
   at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
   at Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.MoveNext()
C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
BSplineWarping1

On Mon, Jun 1, 2015 at 6:10 PM, Andras Lasso <lasso at queensu.ca> wrote:
>> Windows is limited to only allowing one program to open a file at a time
>
> None of the desktop operating systems have such limitations nowadays. You can deny read/write access for other processes if you want to - and maybe some antivirus software does that - but it's not very likely.
>
> There have been some issues in CMake deleting a file and then immediately opening it while doing many try-compile tests in a row, but it was fixed a few years ago (http://www.cmake.org/Bug/view.php?id=12957). I haven't experienced conflicts with anti-virus, file sharing (dropbox, onedrive, etc), or desktop search indexers since then.
>
> You can use utilities such as LockHunter to find out what's locking a particular file.
>
> Andras
>
> -----Original Message-----
> From: Community [mailto:community-bounces at itk.org] On Behalf Of Matt McCormick
> Sent: Monday, June 1, 2015 9:50 AM
> To: Constantinus Spanakis
> Cc: community at itk.org
> Subject: Re: [ITK] Compilation problems
>
> Hi Constantinus,
>
> Welcome to ITK!
>
> You may need to disable anti-malware programs, at least for the used directories.  Visual Studio and anti-malware programs can compete over opening files, and Windows is limited to only allowing one program to open a file at a time.
>
> Hope this helps,
> Matt
>
> On Mon, Jun 1, 2015 at 4:42 AM, Constantinus Spanakis <c.spanakis83 at gmail.com> wrote:
>> Hello. I am new in ITK and i have problem in compiling the ITK.sln in
>> VisualStudio2010. The errors i get are the following ones:
>>
>> Error 1 error LNK1168: cannot open
>> C:\ITK_BIN\bin\Debug\ITK_bld_internal_H5detect.exe for writing
>> C:\ITK_BIN\Modules\ThirdParty\HDF5\src\itkhdf5\src\LINK
>> ITK_bld_internal_H5detect
>> Error 11 error MSB4018: The "CustomBuild" task failed unexpectedly.
>> System.IO.IOException: The process cannot access the file
>> 'C:\Users\kospanak\AppData\Local\Temp\tmpc1f187af264245a691848e5f03846a55.cmd'
>> because it is being used by another process.
>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>    at System.IO.File.Delete(String path)
>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>    at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>    at
>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>> eNext()
>> C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>> ITKQuadEdgeMeshFiltering-all Error 15 error MSB4018: The "CustomBuild"
>> task failed unexpectedly.
>> System.IO.IOException: The process cannot access the file
>> 'C:\Users\kospanak\AppData\Local\Temp\tmp3b81f281da7445e2bbcd68bf3300b50e.cmd'
>> because it is being used by another process.
>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>    at System.IO.File.Delete(String path)
>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>    at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>    at
>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>> eNext()
>> C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>> ITKImageFunction-all Error 38 error MSB6003: The specified task
>> executable "link.exe" could not be run. The process cannot access the
>> file
>> 'C:\ITK_BIN\Examples\Filtering\RGBToGrayscale.dir\Debug\link.write.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 272 6 RGBToGrayscale
>> Error 39 error MSB6003: The specified task executable "mt.exe" could
>> not be run. The process cannot access the file
>> 'C:\ITK_BIN\Examples\Filtering\OtsuThresholdImageFilter.dir\Debug\mt.write.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 574 6
>> OtsuThresholdImageFilter Error 40 error LNK1104: cannot open file
>> 'C:\ITK_BIN\bin\Debug\NeighborhoodIterators4.exe'
>> C:\ITK_BIN\Examples\Iterators\LINK NeighborhoodIterators4 Error 42
>> error LNK1168: cannot open
>> C:\ITK_BIN\bin\Debug\MorphologicalImageEnhancement.exe for writing
>> C:\ITK_BIN\Examples\Filtering\LINK MorphologicalImageEnhancement Error
>> 43 error MSB6003: The specified task executable "CL.exe" could not be
>> run. The process cannot access the file
>> 'C:\ITK_BIN\Examples\SpatialObjects\MeshSpatialObject.dir\Debug\cl.read.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 152 6 MeshSpatialObject
>> Error 44 error LNK1104: cannot open file
>> 'C:\ITK_BIN\bin\Debug\Mesh1.exe'
>> C:\ITK_BIN\Examples\DataRepresentation\Mesh\LINK Mesh1 Error 45 error
>> MSB6003: The specified task executable "link.exe" could not be run.
>> The process cannot access the file
>> 'C:\ITK_BIN\Examples\DataRepresentation\Mesh\Mesh2.dir\Debug\link-cvtres.read.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 396 6 Mesh2
>> Error 46 error MSB6003: The specified task executable "link.exe" could
>> not be run. The process cannot access the file
>> 'C:\ITK_BIN\Examples\RegistrationITKv4\MeanSquaresImageMetric1.dir\Debug\link-cvtres.read.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 272 6 MeanSquaresImageMetric1
>> Error 47 error FTK1011: δεν ήταν δυνατή η δημιουργία του νέου αρχείου
>> καταγραφής παρακολούθησης αρχείων:
>> C:\ITK_BIN\Examples\Filtering\LaplacianImageFilter.dir\Debug\link.read.1.tlog.
>> Το αρχείο υπάρχει. C:\ITK_BIN\Examples\Filtering\FileTracker
>> LaplacianImageFilter
>> Error 48 error MSB4018: The "CustomBuild" task failed unexpectedly.
>> System.IO.IOException: The process cannot access the file
>> 'C:\Users\kospanak\AppData\Local\Temp\tmp3e8036cb67934ab4a2ecd9c93a50d2bc.cmd'
>> because it is being used by another process.
>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>    at System.IO.File.Delete(String path)
>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>    at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>    at
>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>> eNext()
>> C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>> ImageRegistrationHistogramPlotter Error 49 error MSB6003: The
>> specified task executable "link.exe" could not be run. The process
>> cannot access the file
>> 'C:\ITK_BIN\Examples\RegistrationITKv4\ImageRegistration18.dir\Debug\link.write.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 272 6 ImageRegistration18
>> Error 50 error MSB6003: The specified task executable "rc.exe" could
>> not be run. The process cannot access the file
>> 'C:\ITK_BIN\Examples\RegistrationITKv4\ImageRegistration2.dir\Debug\rc.read.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 620 6
>> ImageRegistration2
>> Error 51 error MSB6003: The specified task executable "link.exe" could
>> not be run. The process cannot access the file
>> 'C:\ITK_BIN\Examples\RegistrationITKv4\ImageRegistration13.dir\Debug\link.write.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 396 6 ImageRegistration13
>> Error 53 error MSB4018: The "CustomBuild" task failed unexpectedly.
>> System.IO.IOException: The process cannot access the file
>> 'C:\Users\kospanak\AppData\Local\Temp\tmpb55c8d25ab614f5693d8faff51099a11.cmd'
>> because it is being used by another process.
>>    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath)
>>    at System.IO.File.InternalDelete(String path, Boolean checkHost)
>>    at System.IO.File.Delete(String path)
>>    at Microsoft.Build.Utilities.ToolTask.Execute()
>>    at Microsoft.Build.CPPTasks.TrackedVCToolTask.Execute()
>>    at Microsoft.Build.BackEnd.TaskExecutionHost.Microsoft.Build.BackEnd.ITaskExecutionHost.Execute()
>>    at
>> Microsoft.Build.BackEnd.TaskBuilder.<ExecuteInstantiatedTask>d__20.Mov
>> eNext()
>> C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets 151 6
>> ImageAdaptor2
>> Error 54 error LNK1104: cannot open file
>> 'C:\ITK_BIN\bin\Debug\DeformableRegistration3.exe'
>> C:\ITK_BIN\Examples\RegistrationITKv4\LINK DeformableRegistration3
>> Error 55 error MSB6003: The specified task executable "link.exe" could
>> not be run. The process cannot access the file
>> 'C:\ITK_BIN\Examples\RegistrationITKv4\DeformableRegistration11.dir\Debug\link.7924.write.1.tlog'
>> because it is being used by another process. C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Platforms\x64\Microsoft.Cpp.x64.Targe
>> ts
>> 396 6 DeformableRegistration11
>> Error 57 error LNK1104: cannot open file
>> 'C:\ITK_BIN\bin\Debug\CellularSegmentation2.exe'
>> C:\ITK_BIN\Examples\Segmentation\LINK CellularSegmentation2 Error 59
>> error LNK1104: cannot open file
>> 'C:\ITK_BIN\bin\Debug\BinaryMinMaxCurvatureFlowImageFilter.exe'
>> C:\ITK_BIN\Examples\Filtering\LINK
>> BinaryMinMaxCurvatureFlowImageFilter
>> Error 60 error LNK1168: cannot open
>> C:\ITK_BIN\bin\Debug\BayesianClassifier.exe for writing
>> C:\ITK_BIN\Examples\Statistics\LINK BayesianClassifier
>>
>> What could be the problem?
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
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