[ITK] itk 4.5.1 crashing in HDF5

Bradley Lowekamp blowekamp at mail.nih.gov
Fri May 9 14:30:41 EDT 2014


Hello,

What is you platform, architecture and are you using the ITK provided HDF5? How are you compiling ITK Debug Release?

If you use a system version of HDF5 do you still get the issue?

Is there an issue will all HDF5 files your just this one? Can you share the problematic file?

Brad


On May 9, 2014, at 2:23 PM, Chris Cooper <chris.cooper at veranmedical.com> wrote:

> While trying to read a file, we get a crash with this call stack:
> H5MM_xfree
> H5E_printf_stack
> H5E_clear_stack
> H5Fis_hdf5
> H5::H5File::isHdf5
> HDF5ImageIO::CanReadFile
> ImageIOFactory::CreateImageIO
> ImageFileReader<…>::GenerateOutputInformation
> ProcessObject::UpdateOutputInformation
> ImageBase<3>::UpdateOutputInformation
> DataObject::Update
> ProcessObject::Update
> 
> The code that calls itk looks like this:
> ReaderType::Pointer reader = ReaderType::New();
>         reader->DebugOff();
>         reader->SetGlobalWarningDisplay(false);
>         reader->SetFileName(cache.pathForUid(uid).string());
>         reader->Update();
> 
> This looks similar to an issue discussed here:
> http://www.itk.org/pipermail/insight-users/2013-November/049157.html
> 
> Any thoughts on this problem?  Is there a chance it’s been solved in 4.5.2 (which I am downloading & building now)?
> 
> Thanks,
> Chris
> 
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/community

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