[ITK Community] [Insight-users] Fwd: Problem with .Tiff and surgace extraction in ITK

[Matt McCormick]

Hi Jaume,

This example that uses the BinaryMask3DMeshSource [1] may help.

A binary input can be smoothed before surface extraction as shown here [2].

A mesh can be written to a file as shown here [3].

To transfer the image in memory to VTK, use the ImageToVTKImageFilter from
VtkGlue module [4].

Hope this helps,
Matt

[1]
http://itk.org/gitweb?p=ITK.git;a=blob;f=Examples/Filtering/SurfaceExtraction.cxx;h=ffb4ab6095e94f6b4ee67fb1d1a15bb00c0a4a44;hb=HEAD

[2]
http://itk.org/ITKExamples/src/Filtering/AntiAlias/SmoothBinaryImageBeforeSurfaceExtraction/Documentation.html

[3]
http://itk.org/ITKExamples/src/Filtering/FastMarching/ComputeGeodesicDistanceOnMesh/Documentation.html?highlight=meshfilewriter

[4] http://itk.org/Wiki/ITK/Examples/IO/ImageToVTKImageFilter


On Tue, Feb 25, 2014 at 8:59 AM, Jaume Sastre Tomàs <
jaumesastretomas at gmail.com> wrote:

> Dear Luis and others developers of ITK,
>
> I have a 3D .tiff file that contains 550 slices and I am trying to extract
> an isosurface using Meshes and ITK.
>
>
> I've tried with BinaryMask3DMeshSource but I'm obtaining Nodes = 0 and
> Cells = 0.
>
>
> How is the best way to do it?
>
>
> Read in ITK and convert to VTK? How?
>
>
> I am not able to save the mesh to a file, how can I do it?
>
>
> Thanks a lot for your help.
>
>
> Regards
>
>
> Jaume
>
>
> PS: I can add the my code in case you need
>
>
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