[Community] [Insight-users] Error

Wed Oct 16 13:02:10 EDT 2013

Hi Hana,

This looks good to me.  The include(${ITK_USE_FILE}) should add all
include directories, including the one that contains
itkImageRegistrationMethod.h.

To see the actual compile command, issue

  make VERBOSE=1

There should be a -I flag that added the directory with
itkImageRegistrationMethod.h.

Thanks,
Matt

On Wed, Oct 16, 2013 at 4:55 PM, Hana Cherif <hanacherif62 at gmail.com> wrote:
> Matt!!!
>
> Here is my CMakeLists.txt ::
>
> *********************************************************************************************************
> # This project is designed to be built outside the Insight source tree.
>
> cmake_minimum_required(VERSION 2.4)
> if(COMMAND CMAKE_POLICY)
>   cmake_policy(SET CMP0003 NEW)
> endif()
> PROJECT(RegMeth)
>
>
> # Find ITK.
> FIND_PACKAGE(ITK)
>
> IF(ITK_FOUND)
>
> INCLUDE(${ITK_USE_FILE})
>
> ELSE(ITK_FOUND)
>   MESSAGE(FATAL_ERROR "Cannot build without ITK.  Please set ITK_DIR.")
>
> ENDIF(ITK_FOUND)
>
>
> ADD_EXECUTABLE(RegMeth RegMeth.cxx )
>
> TARGET_LINK_LIBRARIES(RegMeth ${ITK_LIBRARIES}  )
>
> *******************************************************************************************************************
>
> The problem is  in the Target_LINK_LIBRARIES, may be??
>
> Regards!!
>
>
> 2013/10/16 Matt McCormick <matt.mccormick at kitware.com>
>>
>> Hi Hana,
>>
>> What does your CMakeLists.txt look like?
>>
>> Thanks,
>> Matt
>>
>> On Wed, Oct 16, 2013 at 12:18 PM, Hana Cherif <hanacherif62 at gmail.com>
>> wrote:
>> > thank you Christin, I mean 'itkImageRegistrationMethod.h'!! This file
>> > exists
>> > in itk include's folder ,, This why i thought that i must add additional
>> > include directories in my path,,
>> >
>> >
>> > 2013/10/16 Chr. Rossmanith <cr at neuro.ma.uni-heidelberg.de>
>> >
>> >> Try without 'e' -> itkImageRegistrationMethod.h  not ...Methode.h
>> >>
>> >> Christina Rossmanith
>> >>
>> >> Am 16.10.2013 08:35, schrieb Hana Cherif:
>> >>
>> >> I got this error Matt, when i try to compile my code by gcc compiler
>> >> :''
>> >> itkImageRegistrationMethode.h" No such file or directory compilation
>> >> terminated!!!!!!
>> >>
>> >> Although i have compiled itk and my project with RelWithDebInfo as type
>> >> of
>> >> CMakeBuild!!
>> >>
>> >> Thanks,,
>> >>
>> >>
>> >> 2013/10/15 Hana Cherif <hanacherif62 at gmail.com>
>> >>>
>> >>> Thank you so much Matt,,  for all these informations!!
>> >>>
>> >>>
>> >>> 2013/10/15 Matt McCormick <matt.mccormick at kitware.com>
>> >>>>
>> >>>> Hi Hana,
>> >>>>
>> >>>> Adding additional include directories should not be necessary.
>> >>>>
>> >>>> However, when compiling ITK and your project, make sure to set the
>> >>>> CMAKE_BUILD_TYPE to Debug or RelWithDebInfo, which will add the "-g"
>> >>>> flag when compiling.  This adds the symbols (names of functions and
>> >>>> variables) to the output executable so gdb knows what it is looking
>> >>>> at.
>> >>>>
>> >>>> HTH,
>> >>>> Matt
>> >>>>
>> >>>> PS. Please reply-to-all to keep messages on the list.
>> >>>>
>> >>>> On Tue, Oct 15, 2013 at 7:29 PM, Hana Cherif <hanacherif62 at gmail.com>
>> >>>> wrote:
>> >>>> > Yes Matt,,i tried to do that [1] ,, but tell me please how can i
>> >>>> > add
>> >>>> > additional include directories to my path (I use gdb debuger) ?
>> >>>> >
>> >>>> > [1]: http://doc.ubuntu-fr.org/gdb
>> >>>> >
>> >>>> > Regards!!
>> >>>> >
>> >>>> >
>> >>>> > 2013/10/15 Matt McCormick <matt.mccormick at kitware.com>
>> >>>> >>
>> >>>> >> Hi Hana,
>> >>>> >>
>> >>>> >> Examining the program in a debugger [1] like GDB should help.
>> >>>> >>
>> >>>> >> Thanks,
>> >>>> >> Matt
>> >>>> >>
>> >>>> >> [1] http://software-carpentry.org/v3/debugging.html
>> >>>> >>
>> >>>> >> On Tue, Oct 15, 2013 at 5:06 PM, Hana Cherif
>> >>>> >> <hanacherif62 at gmail.com>
>> >>>> >> wrote:
>> >>>> >> > Hello every body!!
>> >>>> >> >
>> >>>> >> > When i tried  to run the executable results from my own
>> >>>> >> > registration
>> >>>> >> > program,, I got this error :
>> >>>> >> >
>> >>>> >> >  /usr/local/include/ITK-4.4/vnl/vnl_matrix.h:207: T&
>> >>>> >> > vnl_matrix<T>::operator()(unsigned int, unsigned int) [with T =
>> >>>> >> > double]:
>> >>>> >> > Assertion `c<cols()' failed.
>> >>>> >> > Aborted (core dumped)
>> >>>> >> >
>> >>>> >> > Note that the compilation of that program has been completed
>> >>>> >> > successfully!!
>> >>>> >> >
>> >>>> >> > What can be the source of this error pleaaaase help!!
>> >>>> >> >
>> >>>> >> > Thank you in advance!!
>> >>>> >> >
>> >>>> >> >
>> >>>> >> > _____________________________________
>> >>>> >> > Powered by www.kitware.com
>> >>>> >> >
>> >>>> >> > Visit other Kitware open-source projects at
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>> >>>> >> >
>> >>>> >> > Kitware offers ITK Training Courses, for more information visit:
>> >>>> >> > http://www.kitware.com/products/protraining.php
>> >>>> >> >
>> >>>> >> > Please keep messages on-topic and check the ITK FAQ at:
>> >>>> >> > http://www.itk.org/Wiki/ITK_FAQ
>> >>>> >> >
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>> >>>> >
>> >>>> >
>> >>>
>> >>>
>> >>
>> >>
>> >>
>> >> _____________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://www.kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
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>> >> http://www.itk.org/mailman/listinfo/insight-users
>> >>
>> >>
>> >>
>> >> _____________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://www.kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
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>> >>
>> >
>> >
>> > _____________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> > http://www.kitware.com/opensource/opensource.html
>> >
>> > Kitware offers ITK Training Courses, for more information visit:
>> > http://www.kitware.com/products/protraining.php
>> >
>> > Please keep messages on-topic and check the ITK FAQ at:
>> > http://www.itk.org/Wiki/ITK_FAQ
>> >
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>> >
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>> >
>
>
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