[CMake] BundleUtilities Question on Linux: Libraries Not Found during fixup?

kent williams nkwmailinglists at gmail.com
Wed Apr 21 15:38:06 EDT 2010 

I downloaded the current Git version of CMake, and it solved that problem.

Now I'm running into a new problem. As it happens, we build our own
TCL 8.5.7, and so a Linux fixup_bundle
needs to/wants to remove the RPATH from the library.   But for some
reason it can't open libtcl8.5.so to fiddle with the RPATH.  Any ideas
what the heck is going on?


-- 81/204: copying '/scratch/kent/newbuild/BT-build/lib/libtcl8.5.so'
CMake Error at /opt/cmake-2.9.20100421/share/cmake-2.9/Modules/BundleUtilities.cmake:431
(file):
  file RPATH_REMOVE could not remove RPATH from file:

    /scratch/kent/newbuild/BT-build/bin/libtcl8.5.so

  Error opening file for update.
Call Stack (most recent call first):
  /opt/cmake-2.9.20100421/share/cmake-2.9/Modules/BundleUtilities.cmake:531
(copy_resolved_item_into_bundle)
  cmake_install.cmake:54 (fixup_bundle)


On Tue, Apr 20, 2010 at 3:08 PM, Clinton Stimpson <clinton at elemtech.com> wrote:
>
> To clarify, the patch I submitted saves you from debugging and figuring out
> what the real problem is.
>
> The actual solution is to use the last parameter of fixup_bundle() and pass in
> "${QT_BINARY_DIR};${QT_LIBRARY_DIR}"
>
> Clint
>
> On Tuesday 20 April 2010 01:46:25 pm Clinton Stimpson wrote:
>> I've already made a patch to fix this problem and put it in the bug tracker
>> (along with a couple other patches).
>>
>> Clint
>>
>> On Tuesday 20 April 2010 01:42:50 pm kent williams wrote:
>> > Well I found the magic incantation on OS X to get fixup_bundle work.
>> > Now I'd like it to work on Linux.
>> >
>> > What's happening is I get many of these messages:
>> >
>> > warning: cannot resolve item 'not'
>> >
>> > The problem comes, as near as I can figure out, from when ldd is run
>> > to discover the library prerequisites.  Running ldd generates a lot of
>> > lines like this:
>> >     libQVTK.so.5.4 => not found
>> >     libQtGui.so.4 => not found
>> >
>> > So the solution seems pretty clear -- if you're on linux, use the
>> > directory list passed into fixup_bundle in order to set
>> > LD_LIBRARY_PATH before running ldd. Otherwise fixup_bundle seems to
>> > want to fix up all sorts of libraries named 'not' and fails.
>> >
>> > I'd just fix it myself but my CMake-fu isn't strong enough to hack
>> > BundleUtilities.cmake
>> >
>> > For now I think I'll just turn off fixup_bundle on Linux...
>> >
>> > compute22 106% ldd BRAINSTracerQT
>> >     libQVTK.so.5.4 => not found
>> >     libQtGui.so.4 => not found
>> >     libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x0000003a22d00000)
>> >     libSM.so.6 => /usr/X11R6/lib64/libSM.so.6 (0x0000003a1f200000)
>> >     libICE.so.6 => /usr/X11R6/lib64/libICE.so.6 (0x0000003a1f000000)
>> >     libXrender.so.1 => /usr/X11R6/lib64/libXrender.so.1 (0x0000003a1fc00000)
>> >     libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x0000003a1f400000)
>> >     libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x0000003a1fa00000)
>> >     libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000003a1ee00000)
>> >     libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000003a1ea00000)
>> >     libQtCore.so.4 => not found
>> >     libz.so.1 => /usr/lib64/libz.so.1 (0x0000003a1e800000)
>> >     libgthread-2.0.so.0 => /usr/lib64/libgthread-2.0.so.0
>> > (0x0000003a24c00000) libglib-2.0.so.0 => /usr/lib64/libglib-2.0.so.0
>> > (0x0000003a20a00000) libgobject-2.0.so.0 =>
>> > /usr/lib64/libgobject-2.0.so.0 (0x0000003a20e00000) librt.so.1 =>
>> > /lib64/tls/librt.so.1 (0x0000003a23600000)
>> >     libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000003a1ec00000)
>> >     libdl.so.2 => /lib64/libdl.so.2 (0x0000003a1e600000)
>> >     libITKAlgorithms.so.3.18 => not found
>> >     libITKStatistics.so.3.18 => not found
>> >     libITKFEM.so.3.18 => not found
>> >     libitkNetlibSlatec.so.3.18 => not found
>> >     libitkv3p_lsqr.so.3.18 => not found
>> >     libITKEXPAT.so.3.18 => not found
>> >     libitksys.so.3.18 => not found
>> >     libvtkRenderingAddOn.so => not found
>> >     libvtkRendering.so.5.4 => not found
>> >     libvtkFiltering.so.5.4 => not found
>> >     libvtkVolumeRendering.so.5.4 => not found
>> >     libtcl8.4.so => /usr/lib64/libtcl8.4.so (0x0000002a95594000)
>> >     libModuleDescriptionParser.so => not found
>> >     libvtkQtChart.so.5.4 => not found
>> >     libQtOpenGL.so.4 => not found
>> >     libGLU.so.1 => /usr/X11R6/lib64/libGLU.so.1 (0x0000003a21800000)
>> >     libGL.so.1 => /usr/X11R6/lib64/libGL.so.1 (0x0000003a21400000)
>> >     libm.so.6 => /lib64/tls/libm.so.6 (0x0000003a1e400000)
>> >     libQtSql.so.4 => not found
>> >     libvtkViews.so.5.4 => not found
>> >     libvtkInfovis.so.5.4 => not found
>> >     libvtklibxml2.so.5.4 => not found
>> >     libvtkalglib.so.5.4 => not found
>> >     libITKNumerics.so.3.18 => not found
>> >     libITKBasicFilters.so.3.18 => not found
>> >     libITKIO.so.3.18 => not found
>> >     libITKNrrdIO.so.3.18 => not found
>> >     libitkgdcm.so.3.18 => not found
>> >     libitkjpeg12.so.3.18 => not found
>> >     libitkjpeg16.so.3.18 => not found
>> >     libitkopenjpeg.so.3.18 => not found
>> >     libuuid.so.1 => /lib64/tls/libuuid.so.1 (0x0000002a95758000)
>> >     libitkpng.so.3.18 => not found
>> >     libitktiff.so.3.18 => not found
>> >     libitkjpeg8.so.3.18 => not found
>> >     libITKSpatialObject.so.3.18 => not found
>> >     libITKCommon.so.3.18 => not found
>> >     libitkvnl_inst.so.3.18 => not found
>> >     libitkvnl_algo.so.3.18 => not found
>> >     libitkv3p_netlib.so.3.18 => not found
>> >     libitkvnl.so.3.18 => not found
>> >     libitkvcl.so.3.18 => not found
>> >     libITKMetaIO.so.3.18 => not found
>> >     libITKDICOMParser.so.3.18 => not found
>> >     libITKniftiio.so.3.18 => not found
>> >     libITKznz.so.3.18 => not found
>> >     libitkzlib.so.3.18 => not found
>> >     libvtkWidgets.so.5.4 => not found
>> >     libvtkHybrid.so.5.4 => not found
>> >     libvtkGraphics.so.5.4 => not found
>> >     libvtkverdict.so.5.4 => not found
>> >     libvtkImaging.so.5.4 => not found
>> >     libvtkftgl.so.5.4 => not found
>> >     libvtkfreetype.so.5.4 => not found
>> >     libXt.so.6 => /usr/X11R6/lib64/libXt.so.6 (0x0000003a23e00000)
>> >     libXss.so.1 => /usr/X11R6/lib64/libXss.so.1 (0x0000003a26900000)
>> >     libXft.so.2 => /usr/X11R6/lib64/libXft.so.2 (0x0000003a20400000)
>> >     libvtkIO.so.5.4 => not found
>> >     libvtkCommon.so.5.4 => not found
>> >     libvtkDICOMParser.so.5.4 => not found
>> >     libvtkmetaio.so.5.4 => not found
>> >     libvtksqlite.so.5.4 => not found
>> >     libvtkpng.so.5.4 => not found
>> >     libvtktiff.so.5.4 => not found
>> >     libvtkzlib.so.5.4 => not found
>> >     libvtkjpeg.so.5.4 => not found
>> >     libvtkexpat.so.5.4 => not found
>> >     libvtksys.so.5.4 => not found
>> >     libvtkexoIIc.so.5.4 => not found
>> >     libvtkNetCDF.so.5.4 => not found
>> >     libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003a20c00000)
>> >     libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003a20600000)
>> >     libc.so.6 => /lib64/tls/libc.so.6 (0x0000003a1e100000)
>> >     libexpat.so.0 => /usr/lib64/libexpat.so.0 (0x0000003a1f600000)
>> >     /lib64/ld-linux-x86-64.so.2 (0x0000003a1df00000)
>> >     libXxf86vm.so.1 => /usr/X11R6/lib64/libXxf86vm.so.1 (0x0000003a21e00000)
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>>
>> Visit other Kitware open-source projects at
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>>
>> Please keep messages on-topic and check the CMake FAQ at:
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>>
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