From KitwarePublic
< TubeTK‎ | Documentation
Revision as of 19:37, 7 January 2015 by Christopher.mullins (talk | contribs) (Created page with " Description: Given an image and a mask, process the mask to match the image. USAGE: ./SimulateAcquisitionArtifactsUsingPrior [--returnparameterfile...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search
  Description: Given an image and a mask, process the mask to match the


  ./SimulateAcquisitionArtifactsUsingPrior  [--returnparameterfile
                                       <std::string>] [--xml] [--echo] [-S
                                       <int>] [-n] [-B <std::vector<int>>]
                                       [-r] [--loadTransform
                                       <std::string>] [--saveTransform
                                       <std::string>] [-o] [-s <float>]
                                       [-g <float>] [-d <int>] [-e <int>]
                                       [-m <std::string>] [-b <float>] [-f
                                       <float>] [--] [--version] [-h]
                                       <std::string> <std::string>
                                       <std::string> <std::string>


  --returnparameterfile <std::string>
    Filename in which to write simple return parameters (int, float,
    int-vector, etc.) as opposed to bulk return parameters (image,
    geometry, transform, measurement, table).
  --processinformationaddress <std::string>
    Address of a structure to store process information (progress, abort,
    etc.). (default: 0)
    Produce xml description of command line arguments (default: 0)
    Echo the command line arguments (default: 0)
  -S <int>,  --seed <int>
    Seed for random processes in the method (0 = no seed). (default: 0)
  -n,  --disableNormalize
    Disable attempt to match mask intensity range with volume intensity
    range. (default: 0)
  -B <std::vector<int>>,  --outputBoundary <std::vector<int>>
    Size of boundary to be excluded from match computation and then
  -r,  --disableParameterOptimization
    Turn off the optimization of the erode, dilate, blur parameters.
    (default: 0)
  --loadTransform <std::string>
    Load the transform to be used instead of registration.
  --saveTransform <std::string>
    Save the registration transform.
  -o,  --disableRegistrationOptimization
    Turn off the optimization of the registration of the prior to the
    image. (default: 0)
  -s <float>,  --samplingRate <float>
    Portion of voxels to use when computing image-match metric. (default:
  -g <float>,  --gaussianBlur <float>
    Radius to use for blurring to simulate tomosynthesis. (default: 9)
  -d <int>,  --dilate <int>
    Radius to use for dilation (after erosion) to simulate tomosynthesis.
    (default: 10)
  -e <int>,  --erode <int>
    Radius to use for erosion to simulate tomosynthesis. (default: 6)
  -m <std::string>,  --metricMask <std::string>
    Points with non-zero values in this mask are used in match
  -b <float>,  --background <float>
    Background intensity value. (default: 0)
  -f <float>,  --foreground <float>
    Foreground intensity value, i.e., object value. (default: 255)
  --,  --ignore_rest
    Ignores the rest of the labeled arguments following this flag.
    Displays version information and exits.
  -h,  --help
    Displays usage information and exits.
    (required)  Input volume.
    (required)  Input mask.
    (required)  Output volume.
    (required)  Output mask.
  Author(s): Stephen R. Aylward (Kitware)
  Acknowledgements: This work is part of the TubeTK project at Kitware. It
  was funded in part by USC:EXPOSE.