TubeTK/Documentation: Difference between revisions

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# '''Command-line (CLI) Applications'''
# '''Command-line (CLI) Applications'''
#* Command-line applications can be run directly from the command line, or graphically using 3D Slicer
#* Command-line applications can be run directly from the command line, or graphically using 3D Slicer
#* [[TubeTK/HessianVesselness2D | Hessian Vesselness 2D]]
#* [[TubeTK/Documentation/AtlasBuilderUsingIntensity | AtlasBuilderUsingIntensity]]
#* [[TubeTK/ExtractCurves2D | Extract Curves 2D]]
#* [[TubeTK/Documentation/ComputeBinaryImageSimilarityMetrics | ComputeBinaryImageSimilarityMetrics]]
#* [[TubeTK/ComputeTortuosity | Compute Tortuosity]]
#* [[TubeTK/Documentation/ComputeImageSimilarityMetrics | ComputeImageSimilarityMetrics]]
#* [[TubeTK/Sliding_Organ_Registration | Sliding Geometries Registration]]
#* [[TubeTK/Documentation/ComputeImageStatisticsUsingMask | ComputeImageStatisticsUsingMask]]
#* [[TubeTK/Documentation/ComputeSegmentTubesParameters | ComputeSegmentTubesParameters]]
#* [[TubeTK/Documentation/ComputeTubeGraphProbability | ComputeTubeGraphProbability]]
#* [[TubeTK/Documentation/ComputeTubeMeasures | ComputeTubeMeasures]]
#* [[TubeTK/Documentation/ComputeTubeProbability | ComputeTubeProbability]]
#* [[TubeTK/Documentation/ConvertInnerOpticToPlus | ConvertInnerOpticToPlus]]
#* [[TubeTK/Documentation/ConvertShrunkenSeedImageToList | ConvertShrunkenSeedImageToList]]
#* [[TubeTK/Documentation/ConvertTRE | ConvertTRE]]
#* [[TubeTK/Documentation/ConvertTubeGraphToImage | ConvertTubeGraphToImage]]
#* [[TubeTK/Documentation/ConvertTubesToDensityImage | ConvertTubesToDensityImage]]
#* [[TubeTK/Documentation/ConvertTubesToImage | ConvertTubesToImage]]
#* [[TubeTK/Documentation/ConvertTubesToSurface | ConvertTubesToSurface]]
#* [[TubeTK/Documentation/ConvertTubeToTubeGraph | ConvertTubeToTubeGraph]]
#* [[TubeTK/Documentation/CropImage | CropImage]]
#* [[TubeTK/Documentation/DeblendTomosynthesisSlicesUsingPrior | DeblendTomosynthesisSlicesUsingPrior]]
#* [[TubeTK/Documentation/EnhanceCoherenceAndEdgesUsingDiffusion | EnhanceCoherenceAndEdgesUsingDiffusion]]
#* [[TubeTK/Documentation/EnhanceCoherenceUsingDiffusion | EnhanceCoherenceUsingDiffusion]]
#* [[TubeTK/Documentation/EnhanceContrastUsingPrior | EnhanceContrastUsingPrior]]
#* [[TubeTK/Documentation/EnhanceEdgesUsingDiffusion | EnhanceEdgesUsingDiffusion]]
#* [[TubeTK/Documentation/EnhanceTubesUsingDiffusion | EnhanceTubesUsingDiffusion]]
#* [[TubeTK/Documentation/EnhanceTubesUsingDiscriminantAnalysis | EnhanceTubesUsingDiscriminantAnalysis]]
#* [[TubeTK/Documentation/EnhanceUsingDiscriminantAnalysis | EnhanceUsingDiscriminantAnalysis]]
#* [[TubeTK/Documentation/EnhanceUsingNJetDiscriminantAnalysis | EnhanceUsingNJetDiscriminantAnalysis]]
#* [[TubeTK/Documentation/ImageCompareCommand | ImageCompareCommand]]
#* [[TubeTK/Documentation/JsonCompareCommand | JsonCompareCommand]]
#* [[TubeTK/Documentation/MergeAdjacentImages | MergeAdjacentImages]]
#* [[TubeTK/Documentation/MergeTubeGraphs | MergeTubeGraphs]]
#* [[TubeTK/Documentation/RegisterImages | RegisterImages]]
#* [[TubeTK/Documentation/RegisterUsingImageCenters | RegisterUsingImageCenters]]
#* [[TubeTK/Documentation/RegisterUsingSlidingGeometries | RegisterUsingSlidingGeometries]]
#* [[TubeTK/Documentation/ResampleImage | ResampleImage]]
#* [[TubeTK/Documentation/SampleCLIApplication | SampleCLIApplication]]
#* [[TubeTK/Documentation/SegmentBinaryImageSkeleton | SegmentBinaryImageSkeleton]]
#* [[TubeTK/Documentation/SegmentConnectedComponents | SegmentConnectedComponents]]
#* [[TubeTK/Documentation/SegmentConnectedComponentsUsingParzenPDFs | SegmentConnectedComponentsUsingParzenPDFs]]
#* [[TubeTK/Documentation/SegmentTubes | SegmentTubes]]
#* [[TubeTK/Documentation/SegmentUsingOtsuThreshold | SegmentUsingOtsuThreshold]]
#* [[TubeTK/Documentation/ShrinkImage | ShrinkImage]]
#* [[TubeTK/Documentation/SimulateAcquisitionArtifactsUsingPrior | SimulateAcquisitionArtifactsUsingPrior]]
#* [[TubeTK/Documentation/SubSampleTubes | SubSampleTubes]]
#* [[TubeTK/Documentation/TextCompareCommand | TextCompareCommand]]
#* [[TubeTK/Documentation/TransformTubes | TransformTubes]]
#* [[TubeTK/Documentation/HessianVesselness2D | Hessian Vesselness 2D]]
#* [[TubeTK/Documentation/ExtractCurves2D | Extract Curves 2D]]
#* [[TubeTK/Documentation/ComputeTortuosity | Compute Tortuosity]]
#* [[TubeTK/Documentation/Sliding_Organ_Registration | Sliding Geometries Registration]]
# '''3D Slicer Python Applications'''
# '''3D Slicer Python Applications'''
#* [[TubeTK/InteractivePDFSegmenter | Interactive PDF Segmenter]]
#* [[TubeTK/Documentation/InteractivePDFSegmenter | Interactive PDF Segmenter]]


= Modules =
= Modules =
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# Object segmentation
# Object segmentation
# Tube extraction
# Tube extraction
#* [[TubeTK/RadiusEstimationFunction|Radius Estimations Functions]]
# Data structures
# Data structures
# Topology analysis
# Topology analysis
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* [[TubeTK/Related Work|Related Work]]
* [[TubeTK/Related Work|Related Work]]
* [https://musiic.lcsr.jhu.edu Medical Ultrasound Imaging and Intervention Collaboration (MUSIIC)]
* [http://www.vmtk.org Vascular Modeling Toolkit (VMTK)]


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[[Category:TubeTK|Documentation]]
[[Category:TubeTK|Documentation]]

Latest revision as of 20:36, 13 October 2015

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Applications

  1. GUI Applications
  2. Command-line (CLI) Applications
  3. 3D Slicer Python Applications

Modules

  1. Pre-processing
  2. Object segmentation
  3. Tube extraction
  4. Data structures
  5. Topology analysis
  6. Editing
  7. Export
  8. OpenIGTLink
  9. Python

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