TubeTK/Development

Resources for Developers

• Design discussions
• Build instructions
• Developers guide
• Developers FAQ
• GIT Tips and Tricks
• Applications
  1. GUI Applications
  2. Command-line (CLI) Applications
     • Hessian Vesselness 2D
     • Extract Curves 2D
• Modules
  1. Pre-processing
     • TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch
  2. Object segmentation
  3. Tube extraction
  4. Data structures
  5. Topology analysis
  6. Editing
  7. Export
  8. OpenIGTLink
• References and related works
• Miscellaneous
  • Math formula editing in Wiki
  • General Wiki Editing FAQ

Collaborative Software Development Tools

• Dashboard
  • https://www.kitware.com/CDash/index.php?project=TubeTK
  • Analytics on dashboard: https://www.google.com/analytics/settings/home#scid=15664873
• Git
  • Website: http://gitorious.org/tubetk/
  • Main Repository:
    • git clone git://gitorious.org/tubetk/tubetk.git
    • git push git@gitorious.org:tubetk/tubetk.git master
  • Playpen
    • git clone git://gitorious.org/tubetk/tubetk-playpen.git
    • git push git@gitorious.org:tubetk/tubetk-playpen.git
• Mantis
  • TBD
• Doxygen
  • TBD

Required third-party tools

• ITK
  • cvs -d :pserver:<YOURNAME>@itk.org:/cvsroot/Insight login ...
  • ITK recommends uuid-dev package on Linux

Optional third-party tools

• Slicer (our preferred method delivery tool)
  • svn co http://svn.slicer.org/Slicer3/trunk Slicer4
  • Requires Qt>=4.6.1 (note: 4.6.2 included with Ubuntu 10.04)
• InsightApplications (Utility apps)
  • cvs -d :pserver:<YOURNAME>@itk.org:/cvsroot/Insight co InsightApplications
  • ImageViewer requires FLTK 1.1.X and VTK
  • ImageColorViewer is a great way to view image registration results.
    • svn co http://svn.easysw.com/public/fltk/fltk/branches/branch-1.1/ fltk-1.1.10
    • http://qt.nokia.com/downloads
  • Requires:
    • VTK
      • git clone git://vtk.org/VTK.git VTK
    • FLTK
      • apt-get install fluid
• IPython (Batch Processing)
  • http://ipython.scipy.org/
  • Using IPython for scientific and parallel computing
    • https://www.osc.edu/cms/sip/