ITK Release 4/Data Collection: Difference between revisions

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Line 24: Line 24:
| Raghu Machiraju || 10 Gb ||  TIFF ||
| Raghu Machiraju || 10 Gb ||  TIFF ||
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|-
| Ziv Yaniv ||  10Gb || DICOM, meta (segmentations/label maps), 2D frame grabbed bmp/jpg (US and X-ray fluoroscopy)||
| Ziv Yaniv ||  10Gb || DICOM, meta (e.g. segmentation label maps), bmp/jpg/avi (2D frame grabbed US and x-ray fluoroscopy images)||
|-
|-
| Brad Lowekamp || 10 Gb || TIFF ? ||
| Brad Lowekamp || 10 Gb || TIFF ? ||

Revision as of 19:19, 15 December 2010

Overview

Testing Data

  • Testing Data

MIDAS Structure

  • Communities (recursive)
    • Collection
      • Items
        • Resources
          • Bitstreams
        • Bitstreams

Expected Data

Group Expected Amount of Data File Formats Features
Raghu Machiraju 10 Gb TIFF
Ziv Yaniv 10Gb DICOM, meta (e.g. segmentation label maps), bmp/jpg/avi (2D frame grabbed US and x-ray fluoroscopy images)
Brad Lowekamp 10 Gb TIFF ?
Hans Johnson 10Gb DICOM ? Nifti ?
Sean Megason 10Gb TIFF ?
Marcel Pratwsaw 10Gb ??
Marc Niethammer 10Gb TIFF

MetaData

Medical

  • physical quantities associated with image acquisition apparatus (e.g. camera calibration for endoscopy and x-ray, US calibration).
  • reason for scan (e.g. suspected liver tumor), should be in header but often is not.
  • contrast phase (e.g. pre contrast, arterial phase).
  • respiratory phase (e.g. end inspiration, end expiration).
  • apparatus used to acquire images when not specified in DICOM (e.g. xyz frame grabber).
  • rigid transformation data acquired with a tracker (pose of US/endoscope relative to tracking system, required for positioning multiple 2D images in 3D space)

Structure

Suggested Organization

This is a graph with borders and nodes. Maybe there is an Imagemap used so the nodes may be linking to some Pages.

MIDAS Installations

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