ITK/Release 4.10 Changed From Previous
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Revision as of 05:03, 31 May 2016 by Matt.mccormick (talk | contribs) (Created page with "Changes from v4.10rc02..v4.10.0 ------------------------------------------------ Bradley Lowekamp (3): COMP: Address uninitialized warning of size COMP: Devirtual...")
Changes from v4.10rc02..v4.10.0
Bradley Lowekamp (3):
COMP: Address uninitialized warning of size
COMP: Devirtualize private methods to prevent instantiation
COMP: Use well defined ZeroValue for unused initial value.
Hans Johnson (1):
BUG: try_compile needs to have CMAKE_CXX_STANDARD passed
Hyun Jae Kang (1):
COMP: Fix unexpected data-cast results of itkCastImageFilter
Jon Haitz Legarreta (1):
BUG: Fix OpenCV-2.4.9 camera empty image issue.
Matthew McCormick (13):
COMP: Bump CastXML for GCC 6.1 support.
STYLE: Improvements to HardConnectedComponentsImageFilter.
ENH: Add baseline for itkHardConnectedComponentImageFilterTest.
STYLE: Improvements for itkHardConnectedComponentImageFilterTest
COMP: HardConnectedComponentImageFilter autological constant out of range
DOC: Sphinx examples update to 2016-05-22.
DOC: Wiki examples update to 2016-05-22.
COMP: MSVC result of 32-bit shift implicitly converted to 64 bits
BUG: Disable building the netlib example.
ENH: Add FloatAddULP
BUG: Decrement index in BSplineTransform by ULPs.
BUG: Adjust index decrement in BSplineTransform
BUG: Remove VNL README left over from subtree merge.
Sumedha Singla (1):
ENH: WhatModulesITK was not finding modules on Windows
Changes from v4.10rc01..v4.10rc02
Davis Vigneault (1):
BUG: Improve error checking and testing for ConnectedRegionsMesh
Hyun Jae Kang (2):
BUG: Address the issue of "Missing Delete" within SwapZeroCornerToIRP.
COMP: Fixed Mac OSX wrapping configuration warning
Matthew McCormick (6):
BUG: The ImageFileReader internal pipeline methods should be protected.
BUG: Use new VNL include directory variables.
COMP: Add missing NeighborhoodAccessor methods to PhasedArray3D image.
BUG: Adjust itk.org ExternalData URL.
COMP: Do not use target_include_directories with CMake 2.8.11.2.
BUG: Address missing shared_ptr for VS9
Changes from v4.9.0..v4.10rc01
Alvaro Sanchez (1):
STYLE: moved itkKappaSigmaThresholdImageFilter/Calculator from Nonunit/Review
Andrey Fedorov (2):
BUG: Add missing itk_expat_mangle.h install target
BUG: fix typo in file name
Bill Hoffman (2):
COMP: fix shared build on Windows when Review is on.
COMP: work around for VS 2015 optimizer bug causing test failures.
Bill Lorensen (6):
ENH: Bump version for style fixups.
ENH: Bump wiki examples version, new remote module process
ENH: Bump wiki examples version, new remote module process
STYLE: SuperClass should be Superclass
COMP: Resolve clang linkage issue
BUG: Valgrind detected an invalid read
Bradley Lowekamp (21):
BUG: Compilation problem with GCC 4.1 and explicit instantiation
ENH: Update Insight Journal handle links to https
ENH: Adding const qualifier to results
BUG: Adding missing const qualifier for GetConfusionMatrix method
BUG: Use Set/GetMacros, fix const correctness and PrintSelf.
ENH: added inlined Zero and one values for integer NumericTraits
ENH: Use constexpr for floating point NumericTraits
ENH: Make NumericTraits functions constexpr for intrinsic
BUG: Add definition of static constexpr NumericTrait members
BUG: Declared static constexpr members need to be defined as constexpr
ENH: ITK_CONSTEXPR_FUNC implies inline
BUG: Addressing VS10 and VS11 NumericTraits linkage issue
BUG: Use LargestPossible region for BSpline domain
BUG: Remove errant file
COMP: Address warning about this usage in initializer list
ENH: Prefer ZeroValue function over variable
STYLE: Use consistent path for try_compiles binary directory
BUG: Don't use "=" in cmake variable name
ENH: Test address of NumericTraits One and Zero constexpr
ENH: Use ITK_USE_64BITS_IDS for windows 64 by default
ENH: Enable run-time dependency on Python library
Davis Vigneault (4):
ENH: Update itkFileTools to allow std::string arguments.
ENH: Add Floored and Truncated Modulus to VNL
ENH: Add Ternary Operator Image Filter
STYLE: Prefer static cast
Dženan Zukić (1):
ENH: CovariantVector's Normalize returns the norm.
Francois Budin (6):
PERF: Simplify itkTemplate New() input type identification.
ENH: Avoid template type specification for image reader in Python wrapping
BUG: Missing IOPixelType strings in ImageIOBase
BUG: Wrapping intermediate files were not automatically updated
ENH: Reduce number of dependencies for XML files generated for wrapping
BUG: GCC is limited when calling overloaded base class functions
GCC-XML Upstream (1):
ENH: pygccxml v1.7.3 (reduced)
GDCM Upstream (1):
GDCM 2015-09-02 (1efe9e28)
Hans Johnson (27):
COMP: Static analysis warning
COMP: Incorrect delete found by static analysis
PERF: Avoid temporary std:vector copying.
COMP: Provide VXL backward compatible includes
COMP: ITK requires legacy methods
ENH: Need propagate ITK_LIBRARY_PROPERTIES
ENH: Added UpdateFromUpstream.sh for VNL
ENH: Manual copy from vxl/master
STYLE: vnl_math_[min|max] -> std::[min|max]
STYLE: Text files should end with a newline
COMP: Prefer C++11 constexpr when possible
COMP: Prefer C++11 constexpr when possible
ENH: Simplify std:: math function definitions
COMP: Error in constexpr usage
COMP: Add const to previous const variables
COMP: SizeValueType can has different definition for itkArray
ENH: Added utility for modernizing vcl_ to std::
ENH: Reference vnl_math.h constants directly
ENH: Avoid using vnl_math_ functions
COMP: Missing symbol for itkStaticConstMacro
COMP: Function override missing in BioCell
ENH: Convert vcl_ to std::
BUG: Windows vcl_snprintf failures addressed
COMP: Disabmiguate function calls to SetData
ENH: Provided static code API for external applications
COMP: Remove possible type conversion warnings
ENH: Merge GDCM release branch
Hyun Jae Kang (25):
COMP: Fixed the compiler error of ITKCommon2TestDriver on OSX 10.6
BUG: Fixed the runtime crash of VideoSourceTest on OSX 10.6
BUG: Fixed the runtime crash of itkTimeProbeTest2
BUG: Fixed the runtime crash of ITKFastMarchingTestDriver's tests on OSX 10.6
BUG: Fixed the runtime crash of ITKReviewTestDriver on OSX 10.6
COMP: Fixed the data conversion warning messages of itkResourceProbe
BUG: Fixed the runtime crash of itkLabelOverlapMeasuresImageFilterTest
BUG: Fixed the runtime crash of ITKStatisticsTestDriver tests on OSX 10.6
BUG: Fixed the runtime crash of itkMRIBiasFieldCorrectionFilterTest
BUG: Fixed the runtime crash of itkBinaryShapeOpeningImageFilterTest1
BUG: Fixed the runtime crash of vnl_test_complex on OSX 10.6
BUG: Fixed the runtime crash of vnl_test_numeric_traits
BUG: Fixed the runtime crash of test_pow_log on OSX 10.6
BUG: Exclude a test code of ITKLabelMapTestDriver on OSX 10.6
BUG: Fixed the failed test case of itkSTLThreadTest on OS X 10.8
COMP: Update KWStyle to utilize the latest boost library
COMP: Fixed the compiler error of ITK on Mingw-w64
COMP: Temporarily suppress the warning messages of data-conversion on VS14
COMP: Put back the disappeared option of "BUILD EXAMPLES".
BUG: Fix segmentation faults on mingw-W64 x86_64.
BUG: Fix the failed test of itkCastImageFilterTest on mingw-w64 compiler.
COMP: Fixed the cmake configuration for ITK_WRAP_DOC
COMP: Fixed the warning messages on VS14.
COMP: Add a missing head file at itkNumericTraitsStdVector.h
COMP: Fix the wraning message of data-conversion
Jean-Christophe Fillion-Robin (4):
COMP: ITKExternalModule: Support building module without test directory.
STYLE: Facilitate maintenance of CastXML generator refactoring CMakeLists
COMP: Allow use of multiple "ITK external modules" in the same project.
STYLE: UseITK: Document static registration of ITK IO factories. See #3393
Jon Haitz Legarreta (7):
COMP: Delete unused variable compiler warning.
ENH: Refactored itkBioCellTest
ENH: Exercise non-tested itk::Math methods.
ENH: Improve MersenneTwister class and test.
ENH: Improve itkFEMLoadPoint coverage.
ENH: Improve itkVersion class code coverage.
ENH: Perform class name checks in test macro
KWSys Robot (1):
KWSys 2016-03-09 (36d8666f)
Lucas Gandel (9):
ENH: Implement GetNumberOfParameter() in ImageToSpatialObjectMetric
COMP: Enable wrapping of multiple "ITK external modules" in the same project
COMP: Fix CASTXML_EXECUTABLE value for multiple external module
COMP: Fix external module testing
COMP: Fix git protocol setup
ENH: Conditionally add testing for External Modules
BUG: Fix call to std::max() with different variable types
Manuel Grizonnet (1):
COMP: add ITKCommon_EXPORT to fix link issues with external applications
Matthew McCormick (73):
ENH: Add TwoProjectionRegistration Remote Module.
ENH: Allow ITKVideoBridgeOpenCV to be built externally.
COMP: Add export specification for itk::ResourceProbe.
ENH: Do not force shared libraries when wrapping.
BUG: BUILD_TESTING should be not advanced.
ENH: Bump ITK version to 4.10.0.
DOC: Correct ITKImageNoise description spelling.
ENH: Wrap FFTNormalizedCorrelationImageFilter.
BUG: Remove Azure ExternalData resource.
BUG: ExternalData downloads from midas3.kitware.com only supports https.
BUG: Update ExternalData resource.
BUG: slicer.kitware.com/midas3/ ExternalData will not support http.
ENH: Add ITK_CUSTOM_LIBRARY_SUFFIX variable.
ENH: Wrap PipelineMonitorImageFilter.
BUG: Update MIDAS url for https in archive testing data script.
ENH: Wrap std::vector< itk::ImageRegion >.
BUG: Fix wrapping build with DEFAULT_MODULES OFF.
ENH: Add RGB pixel support to ImageToVTKImageFilter.
ENH: Add RGB and vector pixel type wrapping for ImageToVTKImageFilter.
STYLE: Use PixelType and ImageType in Python tests.
ENH: Avoid template type specification in Python wrapping.
COMP: Do not use has_key in itkTemplate New.
DOC: Emphasize that push access is not required to contribute patches.
ENH: Download SWIG and PCRE from midas3.kitware.com.
COMP: Ignore build warning from KWStyle's boost.
BUG: Remove Azure ExternalData resource.
BUG: ExternalData downloads from midas3.kitware.com only supports https.
BUG: slicer.kitware.com/midas3/ ExternalData will not support http.
ENH: Update the VNL README-ITK.txt subtree commit revision.
BUG: Mark VXL internal CMake variables as advanced.
BUG: Run itk_module_target on itknetlib.
DOC: Direct patches for VXL upstream to the GitHub repository.
BUG: Run itk_module_target on itknetlib.
COMP: Account for removal of vcl_* from upstream VXL.
COMP: Remove itkTypeMacro from BioCellHelper.
COMP: Convert itkBioCellTest arguments from double to int.
COMP: Turn off BUILD_DOCUMENTATION for VNL.
BUG: Install VXL config files to backwards-compatible locations.
ENH: Remove vcl_complex from the wrapping.
BUG: Install vnl_export.h and vnl_algo_export.h to previous locations.
BUG: midas3.kitware.com only supports the https protocol.
BUG: ImageIOBase SetDimensions should take SizeValueType.
ENH: Add wrapping for ImagePCAShapeModelEstimator.
COMP: Do not specify COMPONENTS with find_package(VTK.
DOC: Fix FFTW warning grammar.
COMP: Build against system HDF5 1.8.16.
ENH: Set a default CMAKE_BUILD_TYPE when building a module externally
COMP: Make initial HDF5 discovery of 1.8.16 quiet.
ENH: Use hidden symbol visibility for the CPython extension modules.
ENH: Turn on CMAKE_POSITION_INDEPENDENT_CODE by default.
BUG: FEMLoadPoint uninitialized value in the constructor.
BUG: Fix wrapping of complex types in VNL.
ENH: Bump CMakeLists.txt version 4.9.1.
COMP: Address ITKCommon Python submodule order.
BUG: Extend ExternalData_TIMEOUT_ABSOLUTE to 900 seconds.
BUG: Do not run KWStyle Git config on a release tarball.
COMP: Ambiguous RGBPixel access in CustomColormapFunction.
BUG: Prevent division by zero in PhasedArray3DSpecialCoordinatesImage.
BUG: Initialize azimuth and elevation to pi/2 in PhasedArray3D.
BUG: Increase MaskLabel backwards compatibility in N4 bias correction.
ENH: Deprecate MaskLabel in N4BiasFieldCorrectionImageFilter.
COMP: Update CastXML to support Visual Studio 2015 Update 2.
COMP: Do not set wrapping library visibility with static builds.
COMP: Update CastXML to support Visual Studio 2015 Update 2.
COMP: Broaden the KWStyle warning exception.
COMP: Update KWStyle version.
BUG: Do not use the same output file in N4BiasField Test 2,3.
COMP: Expand EXERCISE_BASIC_OBJECT_METHODS for other GCC versions.
ENH: Update Cuberille Remote to 2015-05-01.
ENH: Enable registration of the IOOpenSlide module through CMake.
ENH: Update itk.org URL's for HTTPS support.
BUG: Use CastXML built against LLVM with LLVM_ENABLE_TERMINFO OFF.
BUG: Fix Python wrapping on Windows when ITK_USE_64BIT_IDS is ON.
Michka Popoff (12):
ENH: Use importlib for python 3.4 instead of imp
ENH: Update to Swig 3.0.8
ENH: Update PCRE to version 8.38
ENH: Wrap RayCastInterpolateImageFunction
ENH: Wrap RayCastInterpolateImageFunction
COMP: Remove debug output after vcl_complex removal from wrapping
ENH: Consolidate .idx file generation with swig .i generation.
ENH: Update UpdatepygccxmlFromUpstream.sh script
COMP: Set CastXML path and name for pygccxml 1.7.3
COMP: Fix RayCastInterpolateImageFunction wrapping for image dim 2
ENH: Use argparse instead of optparse in igenerator.py
ENH: Use https URL for OS X castxml binary (for consistency)
Nick Tustison (2):
ENH: Add fixed/moving masking in reg. methods.
ENH: Making the mask usage consistent with ITK.
Pablo Hernandez-Cerdan (1):
COMP: Fix warn in FFTW about delete [].
Sean McBride (18):
COMP: Made script OS X compatible
COMP: mark GDCM GetSeriesHelper() method as deprecated
BUG: update script to fetch GDCM from its release-2-4 branch instead of master
DOC: Updated comment to reflect new GDCM version
COMP: Fixed recently introduced build error with deprecated GDCM method
BUG: Fixed invalid memory access found by ASan
COMP: Fixed clang warning about macro expansion giving defined
COMP: Fixed minor dashboards warnings and typos.
COMP: Fixed a bunch of clang -Wunreachable-code-break warnings
COMP: fixed some dashboard warnings (dead code, false positive)
BUG: Fixed off-by-1 error found by ASan
COMP: Fixed clang -Wcomma warning
COMP: Introduce ITK_FALLTHROUGH, to suppress switch fall through warnings
COMP: Fixed -Wwritable-strings warnings
COMP: Fixed remaining -Wcomma warnings
ENH: switch gdcm to release branch, not release-2-4
COMP: Hack HDF5 to build under ASan & UBSan
COMP: fixed clang -Wdeprecated-writable-strings warning
Shawn Waldon (1):
STYLE: move itkGaussianDerivativeOperator
Sujin Philip (1):
STYLE: Move itkBox* Filters
Sumedha Singla (3):
ENH: Issue: ITK#3363 Replaced assignment in SetParameters function.
ENH: Remove unnecessary const_cast
BUG: Fixed the test itkHDF5ImageIOTest
VXL Maintainers (9):
VNL 2015-11-22 (ea1d60fb)
VNL 2016-03-02 (cb31149e)
VNL 2016-03-13 (ae34f0fc)
VNL 2016-03-15 (751698ab)
VNL 2016-03-19 (df10fefa)
VNL 2016-03-25 (f0040231)
VNL 2016-03-30 (88f50849)
VNL 2016-04-22 (0ed18124)
VNL 2016-04-26 (6b168535)
Vladimir S. FONOV (3):
MINC 2015-12-17 (dcb93a5f)
MINC 2016-01-30 (783bca38)
MINC 2016-02-24 (8632513e)
Ziv Yaniv (1):
BUG: Interpretation of the Euler angles ZYX or ZXY was not exported.
ITK Sphinx Examples Changelog
Dženan Zukić (1):
ENH: Default is current directory. Avoid usage of the class SeriesHelper.
Matt McCormick (19):
BUG: Do not depend on the VTK/OpenCV build when system provided.
ENH: Add ConvertAnitkImageTovtkImageData example.
ENH: Bump VTK's superbuild version to 7.0.0.
STYLE: CMake style updates to AddOffsetToIndex/CMakeLists.txt
ENH: Updates to CreateNewExample.py.in
ENH: Add ConvertvtkImageDataToAnitkImage example.
ENH: Update sphinx-bootstrap-theme to v0.4.8
ENH: Add Python version of StreamAPipeline.
ENH: Add ConvertAnRGBitkImageTovtkImageData
ENH: Add a PACE progress bar.
ENH: Add more Python content to CreateNewExample.py.
ENH: Add ConvertRGBvtkImageDataToAnitkImage
BUG: Disable Create3DVolume Python baseline test.
ENH: Add PerformRegistrationOnVectorImages.
ENH: Update itk.org URL's for HTTPS support.
COMP: Use itk::IndexValueType for subdomain index.
COMP: Bump OpenCV to 3.1.0.
BUG: Fix superbuild dependencies.
ENH: Bump ITK to v4.10.0.
ITK Software Guide Changelog
Matt McCormick (6):
DOC: Correct spelling in the wrapping description.
BUG: ExternalData servers now use https.
ENH: Update itk.org URL's for HTTPS support.
DOC: Adding wrapper .dll's to PATH on Windows is no longer necessary.
DOC: Document how to add a third-party dependency to a module.
ENH: Bump ITK ExternalProject to v4.10.0
