TubeTK/Documentation/SimulateAcquisitionArtifactsUsingPrior

  Description: Given an image and a mask, process the mask to match the
  image.

USAGE:

  ./SimulateAcquisitionArtifactsUsingPrior  [--returnparameterfile
                                       <std::string>]
                                       [--processinformationaddress
                                       <std::string>] [--xml] [--echo] [-S
                                       <int>] [-n] [-B <std::vector<int>>]
                                       [-r] [--loadTransform
                                       <std::string>] [--saveTransform
                                       <std::string>] [-o] [-s <float>]
                                       [-g <float>] [-d <int>] [-e <int>]
                                       [-m <std::string>] [-b <float>] [-f
                                       <float>] [--] [--version] [-h]
                                       <std::string> <std::string>
                                       <std::string> <std::string>

Where:

  --returnparameterfile <std::string>
    Filename in which to write simple return parameters (int, float,
    int-vector, etc.) as opposed to bulk return parameters (image,
    geometry, transform, measurement, table).

  --processinformationaddress <std::string>
    Address of a structure to store process information (progress, abort,
    etc.). (default: 0)

  --xml
    Produce xml description of command line arguments (default: 0)

  --echo
    Echo the command line arguments (default: 0)

  -S <int>,  --seed <int>
    Seed for random processes in the method (0 = no seed). (default: 0)

  -n,  --disableNormalize
    Disable attempt to match mask intensity range with volume intensity
    range. (default: 0)

  -B <std::vector<int>>,  --outputBoundary <std::vector<int>>
    Size of boundary to be excluded from match computation and then
    cropped.

  -r,  --disableParameterOptimization
    Turn off the optimization of the erode, dilate, blur parameters.
    (default: 0)

  --loadTransform <std::string>
    Load the transform to be used instead of registration.

  --saveTransform <std::string>
    Save the registration transform.

  -o,  --disableRegistrationOptimization
    Turn off the optimization of the registration of the prior to the
    image. (default: 0)

  -s <float>,  --samplingRate <float>
    Portion of voxels to use when computing image-match metric. (default:
    0.1)

  -g <float>,  --gaussianBlur <float>
    Radius to use for blurring to simulate tomosynthesis. (default: 9)

  -d <int>,  --dilate <int>
    Radius to use for dilation (after erosion) to simulate tomosynthesis.
    (default: 10)

  -e <int>,  --erode <int>
    Radius to use for erosion to simulate tomosynthesis. (default: 6)

  -m <std::string>,  --metricMask <std::string>
    Points with non-zero values in this mask are used in match
    computations.

  -b <float>,  --background <float>
    Background intensity value. (default: 0)

  -f <float>,  --foreground <float>
    Foreground intensity value, i.e., object value. (default: 255)

  --,  --ignore_rest
    Ignores the rest of the labeled arguments following this flag.

  --version
    Displays version information and exits.

  -h,  --help
    Displays usage information and exits.

  <std::string>
    (required)  Input volume.

  <std::string>
    (required)  Input mask.

  <std::string>
    (required)  Output volume.

  <std::string>
    (required)  Output mask.

  Author(s): Stephen R. Aylward (Kitware)

  Acknowledgements: This work is part of the TubeTK project at Kitware. It
  was funded in part by USC:EXPOSE.