TubeTK/Developers FAQ

How do I enter equations in the Wiki?

• Math formula editing in Wiki
• General Wiki Editing FAQ

How do I do coverage and profiling on linux?

• Coverage Measurement and Profiling
  • http://www.linuxjournal.com/node/6758/print

How do I write compressed images?

ITK, regretfully, doesn't write compressed images by default. You must add one line to your code, to write compressed images:

typename ImageWriterType::Pointer writer = ImageWriterType::New();
writer->SetFileName( outputVolume.c_str() );
writer->SetInput( cropFilter.GetOutput() );
writer->SetUseCompression( true );                             // ADD THIS LINE

What should I know about storing testing data?

Input Images

• Store input images in TubeTK/Data
• Store all images in a compressed format.
• Don't put baseline images in TubeTK/Data.

Test Baseline Images

• Baseline images should be stored with their tests. We'd like to keep TubeTK's modules as portable and self-contained as possible. We'll share input data by placing it in TubeTK/Data, but data specific to a particular test (e.g., baseline images) should be stored with the test. We've decided on the filesystem hierarchy

TubeTK/Applications/CLI/<myprogram>/Testing/Baselines 

for storing the baseline images for the tests for myprogram.

• Don't put baseline images in TubeTK/Data.