Connectome:Future

Current Progress on Connectome

Image Acquisition Toolkit

• Acquisition
• Alignment
• Stitching
  • Overlatpping stacks
  • separate sections

Image Storage and Analysis Powerhouse

Reference: IMViewer

• For pathology
• For connectome
• Annotaions

Future Proposals

Acquisition Toolkit

• Development as an enhancement to | Micro Manager
• Present the complete acquisition, stitch / merge, store, manage, process pipeline

Light Microscopy

• Future of acquisition toolkit
• Image database
• Future of Open SSECRET like viewer for navigation
• A toolkit specialized at brainbow like imagery

• Especially contrasting the tools developed for EM
  • Advantages of light over
  • EM more high res - synaptic patterns
  • Fluorensence

Digital Pathology

• Development of an open source toolkit for
  • Development and validation of new automated algorithms
  • Enriching domain specific knowledge
  • Integration with Midas for storing annotating and analyzing large images