ITK/Examples/SimpleOperations/CustomColormap

CustomColormap.cxx

<source lang="cpp">

1. include "itkCustomColormapFunction.h"
2. include "itkScalarToRGBColormapImageFilter.h"

1. include "itkImage.h"
2. include "itkImageFileReader.h"
3. include "itkCustomColormapFunction.h"
4. include "itkScalarToRGBColormapImageFilter.h"
5. include "itkRGBPixel.h"
6. include "itkMersenneTwisterRandomVariateGenerator.h"

1. include "QuickView.h"

typedef itk::RGBPixel<unsigned char> RGBPixelType; typedef itk::Image<RGBPixelType, 2> RGBImageType; typedef itk::Image<unsigned char, 2> ImageType; typedef itk::Function::CustomColormapFunction<

 ImageType::PixelType, RGBImageType::PixelType> ColormapType;

static void CreateRandomImage(

 ImageType::Pointer image, unsigned int width = 200, unsigned height = 300);

static void CreateRandomColormap(

 ColormapType::Pointer colormap, unsigned int size = 255);

int main(int, char *[]) {

 ImageType::Pointer image = ImageType::New();

 CreateRandomImage(image);
 
 typedef itk::ScalarToRGBColormapImageFilter<ImageType, RGBImageType> ColormapFilterType;
 ColormapFilterType::Pointer colormapFilter1 =
   ColormapFilterType::New();

 ColormapType::Pointer largeColormap
   = ColormapType::New();
 CreateRandomColormap(largeColormap, 255);

 colormapFilter1->SetInput (image);
 colormapFilter1->SetColormap(largeColormap);

 QuickView viewer;
 viewer.AddRGBImage(
   colormapFilter1->GetOutput(),
   true);

 viewer.Visualize();

 return EXIT_SUCCESS;

}

void CreateRandomImage(ImageType::Pointer image,\

                      unsigned int width,
                      unsigned height)

{

 itk::Statistics::MersenneTwisterRandomVariateGenerator::Pointer random =
   itk::Statistics::MersenneTwisterRandomVariateGenerator::New();
 // Create an image with 2 connected components
 ImageType::RegionType region;
 ImageType::IndexType start;
 start[0] = 0;
 start[1] = 0;

 ImageType::SizeType size;
 size[0] = width;
 size[1] = height;

 region.SetSize(size);
 region.SetIndex(start);

 image->SetRegions(region);
 image->Allocate();

 itk::ImageRegionIterator<ImageType> imageIterator(image,region);

 unsigned int cnt = 0;

 ImageType::PixelType value = random->GetUniformVariate(0.0, 255.0);
 unsigned int bandSize = 5;
 while(!imageIterator.IsAtEnd())
   {
   if (cnt % (size[0] * bandSize) == 0)
     {
     value = random->GetUniformVariate(0.0, 255.0);
     bandSize = static_cast<unsigned int>(random->GetUniformVariate(5, 10));
     }
     imageIterator.Set(static_cast<ImageType::PixelType>(value));
   ++imageIterator;
   ++cnt;
   }

}

void CreateRandomColormap(ColormapType::Pointer colormap, unsigned int size) {

 ColormapType::ChannelType redChannel;
 ColormapType::ChannelType greenChannel;
 ColormapType::ChannelType blueChannel;
 itk::Statistics::MersenneTwisterRandomVariateGenerator::Pointer random =
   itk::Statistics::MersenneTwisterRandomVariateGenerator::New();

 random->SetSeed ( 8775070 );
 for (unsigned int i = 0; i < size; ++i)
   {
   redChannel.push_back(static_cast<ColormapType::RealType>
                        (random->GetUniformVariate(.3, 1.0)));
   greenChannel.push_back(static_cast<ColormapType::RealType>
                          (random->GetUniformVariate(.3, 1.0)));
   blueChannel.push_back(static_cast<ColormapType::RealType>
                         (random->GetUniformVariate(.3, 1.0)));
   }
 colormap->SetRedChannel(redChannel);
 colormap->SetGreenChannel(greenChannel);
 colormap->SetBlueChannel(blueChannel);

} </source>

CMakeLists.txt

<syntaxhighlight lang="cmake"> cmake_minimum_required(VERSION 3.9.5)

project(CustomColormap)

find_package(ITK REQUIRED) include(${ITK_USE_FILE}) if (ITKVtkGlue_LOADED)

 find_package(VTK REQUIRED)
 include(${VTK_USE_FILE})

else()

 find_package(ItkVtkGlue REQUIRED)
 include(${ItkVtkGlue_USE_FILE})
 set(Glue ItkVtkGlue)

endif()

add_executable(CustomColormap MACOSX_BUNDLE CustomColormap.cxx) target_link_libraries(CustomColormap

 ${Glue}  ${VTK_LIBRARIES} ${ITK_LIBRARIES})

</syntaxhighlight>

Download and Build CustomColormap

Click here to download CustomColormap. and its CMakeLists.txt file. Once the tarball CustomColormap.tar has been downloaded and extracted,

cd CustomColormap/build 

• If ITK is installed:

cmake ..

• If ITK is not installed but compiled on your system, you will need to specify the path to your ITK build:

cmake -DITK_DIR:PATH=/home/me/itk_build ..

Build the project,

make

and run it:

./CustomColormap

WINDOWS USERS PLEASE NOTE: Be sure to add the VTK and ITK bin directories to your path. This will resolve the VTK and ITK dll's at run time.

Building All of the Examples

Many of the examples in the ITK Wiki Examples Collection require VTK. You can build all of the the examples by following these instructions. If you are a new VTK user, you may want to try the Superbuild which will build a proper ITK and VTK.

ItkVtkGlue

ITK >= 4

For examples that use QuickView (which depends on VTK), you must have built ITK with Module_ITKVtkGlue=ON.

ITK < 4

Some of the ITK Examples require VTK to display the images. If you download the entire ITK Wiki Examples Collection, the ItkVtkGlue directory will be included and configured. If you wish to just build a few examples, then you will need to download ItkVtkGlue and build it. When you run cmake it will ask you to specify the location of the ItkVtkGlue binary directory.