ITK/Examples/ImageProcessing/ValuedRegionalMinimaImageFilter

ValuedRegionalMinimaImageFilter.cxx

<source lang="cpp">

1. include "itkImage.h"
2. include "itkImageFileWriter.h"
3. include "itkValuedRegionalMinimaImageFilter.h"

typedef itk::Image<unsigned char, 2> ImageType;

static void CreateImage(ImageType::Pointer image);

int main(int, char *[]) {

 ImageType::Pointer image = ImageType::New();
 CreateImage(image);

 typedef itk::ValuedRegionalMinimaImageFilter <ImageType, ImageType >
         ValuedRegionalMinimaImageFilter;

 ValuedRegionalMinimaImageFilter::Pointer filter
         = ValuedRegionalMinimaImageFilter::New ();
 filter->SetInput(image);

 typedef itk::ImageFileWriter< ImageType > WriterType;
 WriterType::Pointer writer = WriterType::New();

 writer->SetFileName("input.png");
 writer->SetInput( image );
 writer->Update();

 writer->SetFileName("output.png");
 writer->SetInput( filter->GetOutput() );
 writer->Update();

 return EXIT_SUCCESS;

}

void CreateImage(ImageType::Pointer image) {

 // Create an image with 2 connected components
 ImageType::RegionType region;
 ImageType::IndexType start;
 start[0] = 0;
 start[1] = 0;

 ImageType::SizeType size;
 unsigned int NumRows = 200;
 unsigned int NumCols = 300;
 size[0] = NumCols;
 size[1] = NumRows;

 region.SetSize(size);
 region.SetIndex(start);

 image->SetRegions(region);
 image->Allocate();

 // Make two intensity blobs
 for(unsigned int r = 0; r < NumRows; r++)
 {
     for(unsigned int c = 0; c < NumCols; c++)
     {
         ImageType::IndexType pixelIndex;
         pixelIndex[0] = c;
         pixelIndex[1] = r;

         double c1 = c - 100.0;
         double c2 = c - 200.0;

         double rr = r - 100.0;

         double v1 = 200.0 - vcl_sqrt( rr*rr + c1*c1 );
         double v2 = 150.0 - vcl_sqrt( rr*rr + c2*c2 );

         if( v1 > 190.0 ) v1 = 190.0;
         if( v2 > 140.0 ) v2 = 140.0;

         double maxv = v1;
         if( maxv < v2 )  maxv = v2;

         double val = maxv;

         if( val <   0.0 ) val = 0.0;
         if( val > 255.0 ) val = 255.0;

         if( c < 5 ) val = 255.0;

         image->SetPixel(pixelIndex, static_cast<unsigned char>(val) );
     }
 }

}

</source>

CMakeLists.txt

<syntaxhighlight lang="cmake"> cmake_minimum_required(VERSION 3.9.5)

project(ValuedRegionalMinimaImageFilter)

find_package(ITK REQUIRED) include(${ITK_USE_FILE}) if (ITKVtkGlue_LOADED)

 find_package(VTK REQUIRED)
 include(${VTK_USE_FILE})

endif()

add_executable(ValuedRegionalMinimaImageFilter MACOSX_BUNDLE ValuedRegionalMinimaImageFilter.cxx)

if( "${ITK_VERSION_MAJOR}" LESS 4 )

 target_link_libraries(ValuedRegionalMinimaImageFilter ITKReview ${ITK_LIBRARIES})

else( "${ITK_VERSION_MAJOR}" LESS 4 )

 target_link_libraries(ValuedRegionalMinimaImageFilter ${ITK_LIBRARIES})

endif( "${ITK_VERSION_MAJOR}" LESS 4 )

</syntaxhighlight>

Download and Build ValuedRegionalMinimaImageFilter

Click here to download ValuedRegionalMinimaImageFilter and its CMakeLists.txt file. Once the tarball ValuedRegionalMinimaImageFilter.tar has been downloaded and extracted,

cd ValuedRegionalMinimaImageFilter/build

• If ITK is installed:

cmake ..

• If ITK is not installed but compiled on your system, you will need to specify the path to your ITK build:

cmake -DITK_DIR:PATH=/home/me/itk_build ..

Build the project:

make

and run it:

./ValuedRegionalMinimaImageFilter

WINDOWS USERS PLEASE NOTE: Be sure to add the ITK bin directory to your path. This will resolve the ITK dll's at run time.

Building All of the Examples

Many of the examples in the ITK Wiki Examples Collection require VTK. You can build all of the the examples by following these instructions. If you are a new VTK user, you may want to try the Superbuild which will build a proper ITK and VTK.

ItkVtkGlue

ITK >= 4

For examples that use QuickView (which depends on VTK), you must have built ITK with Module_ITKVtkGlue=ON.

ITK < 4

Some of the ITK Examples require VTK to display the images. If you download the entire ITK Wiki Examples Collection, the ItkVtkGlue directory will be included and configured. If you wish to just build a few examples, then you will need to download ItkVtkGlue and build it. When you run cmake it will ask you to specify the location of the ItkVtkGlue binary directory.