Connectome:Future: Difference between revisions
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= Future Proposals = | = Future Proposals = | ||
== Acquisition Toolkit == | |||
* Development as an enhancement to [http://www.micro-manager.org/ | Micro Manager] | |||
* Present the complete acquisition, stitch / merge, store, manage, process pipeline | |||
== Light Microscopy == | == Light Microscopy == | ||
Revision as of 16:00, 10 March 2011
Current Progress on Connectome
Image Acquisition Toolkit
- Acquisition
- Alignment
- Stitching
- Overlatpping stacks
- separate sections
Image Storage and Analysis Powerhouse
Reference: IMViewer
- For pathology
- For connectome
- Annotaions
Future Proposals
Acquisition Toolkit
- Development as an enhancement to | Micro Manager
- Present the complete acquisition, stitch / merge, store, manage, process pipeline
Light Microscopy
- Future of acquisition toolkit
- Image database
- Future of Open SSECRET like viewer for navigation
- A toolkit specialized at brainbow like imagery
- Especially contrasting the tools developed for EM
- Advantages of light over
- EM more high res - synaptic patterns
- Fluorensence
Pathology
- Development of new automated algorithms
- Toolkit for enriching domain specific knowledge
