ITK/Examples

These are fully independent, compilable examples. There is significant overlap in the examples, but they are each intended to illustrate a different concept and be fully stand alone compilable. Please add examples in your areas of expertise!

Simple Operations

Example Name	ITK Classes Demonstrated	Description
Distance between two points	Point
Create a vector	Vector
Create a covariant vector	CovariantVector
Variable length vector	VariableLengthVector	main() works properly, but neither conversion seems to work.
Get the name/type/class of an object		GetNameOfClass()

Image Basics

Example Name	ITK Classes Demonstrated	Description
Apply a mask to an image	MaskImageFilter
Duplicate an image	ImageDuplicator
Pass image pixels through a sigmoid function	SigmoidImageFilter	The qualitative description of how Alpha and Beta affect the function from the ITK Software Guide and the associated images would be nice to add to the doxygen.
Produce an image of noise	RandomImageSource
Threshold an image	ThresholdImageFilter	The result is the original image but with the values below (or above) the threshold "clamped" to an output value.
Threshold an image	BinaryThresholdImageFilter	The result is a binary image (inside the threshold region or outside the threshold region).
Apply a custom operation to each pixel in an image	UnaryFunctorImageFilter	Rotate the vectors in an image.
Find the minimum and maximum value (and the position of the value) in an image	MinimumMaximumImageCalculator
Add two images together	AddImageFilter
Paste a part of one image into another image	PasteImageFilter
Create a vector image	VectorImage	An image with an ND vector at each pixel
Multiply two images together	MultiplyImageFilter
Iterate over a region of an image with a neighborhood	NeighborhoodIterator
Iterate over a region of an image	ImageRegionIterator
Read an image	ImageFileReader
Extract a portion of an image (region of interest)	RegionOfInterestImageFilter
Write an image	ImageFileWriter
Smooth an image using curvature flow	CurvatureFlowImageFilterType
Rescale the intensity values of an image to a specified range	RescaleIntensityImageFilter
Set specified pixels to specified values	Image
Label connected components in a binary image	ConnectedComponentImageFilter
Normalize an image	NormalizeImageFilter
Cast an image from one type to another	CastImageFilter
Switch the axes of an image	PermuteAxesImageFilter
Linearly interpolate a position in an image	LinearInterpolateImageFunction
Display an ITK image	ImageToVTKImageFilter

Image Edges, Gradients, and Derivatives

Example Name	ITK Classes Demonstrated	Description
Compute the derivative of an image in a particular direction	DerivativeImageFilter
Find the gradient magnitude of the image first smoothed with a Gaussian kernel	GradientMagnitudeRecursiveGaussianImageFilter
Find higher derivatives of an image	RecursiveGaussianImageFilter
Find edges in an image	CannyEdgeDetectionImageFilter	How to set a reasonable Threshold for the output edges?
Extract the boundaries of connected regions in a binary image	BinaryContourImageFilter
Compute the gradient magnitude image	GradientMagnitudeImageFilter
Compute the Laplacian of an image	LaplacianRecursiveGaussianImageFilter

Smoothing

Example Name	ITK Classes Demonstrated	Description
Mean filter an image	MeanImageFilter	Replace each pixel by the mean of its neighborhood
Median filter an image	MedianImageFilter	Replace each pixel by the median of its neighborhood
Smooth an image with a discrete Gaussian filter	DiscreteGaussianImageFilter
Blur an image	BinomialBlurImageFilter
Bilateral filter an image	BilateralImageFilter	Edge preserving smoothing.

Morphology

Example Name	ITK Classes Demonstrated	Description
Erode a binary image	BinaryErodeImageFilter	Shouldn't the output be "cleaner"? That is, solid regions should remain solid.
Dilate a binary image	BinaryDilateImageFilter	Wait until BinaryErodeImageFilter is working.
Dilate a grayscale image	GrayscaleDilateImageFilter	Wait until BinaryErodeImageFilter is working.
Erode a grayscale image	GrayscaleErodeImageFilter	Wait until BinaryErodeImageFilter is working.

Missing

Example Name	ITK Classes Demonstrated	Description

Spectral Analysis

Example Name	ITK Classes Demonstrated	Description
Compute the FFT of an image	VnlFFTRealToComplexConjugateImageFilter

Small Problems

Example Name	ITK Classes Demonstrated	Description
Apply a function to every pixel with access to its neighborhood	NeighborhoodOperatorImageFunction
In-place filtering of an image	InPlaceImageFilter	This only works for filters which derive from itkInPlaceImageFilter
Crop an image	CropImageFilter	Works, but I'm not exactly sure how to specify the crop region. The documentation should be improved.
Pad an image with a constant value	ConstantPadImageFilter	Not sure how to specify the final output size/extent. The documentation should be improved.
Pad an image	MirrorPadImageFilter	Not sure how to specify the final output size/extent. The documentation should be improved.
Pad an image by wrapping	WrapPadImageFilter	Not sure how to specify the final output size/extent. The documentation should be improved.
Shrink an image	ShrinkImageFilter	Image doesn't seem to be shrunk?
Flip an image over specified axes	FlipImageFilter	The axes specification is not quite right - warning: address of axes always evaluates true
Convert a VTK image to an ITK image	VTKImageToImageFilter	Seems to expect an input image with only 1 component? (i.e. greyscale)
Normalized correlation	NormalizedCorrelationImageFilter	Output is all black?
Iterate over a region of an image with a shaped neighborhood	ShapedNeighborhoodIterator	How do you specify the neighborhood?

Big Problems

Example Name	ITK Classes Demonstrated	Description
Join images, stacking their components	JoinImageFilter	How to convert the vector image produced by the joinFilter to a standard image?
Find the best position of the moving image in the fixed image.	MeanSquaresImageToImageMetric	Output (0,0) is incorrect.
Translate an image	TranslationTransform, ResampleImageFilter	This example currently freezes.
Compute and display the gradient of an image	GradientImageFilter	Blank output.

Easily display a set of images