TubeTK

PUBLIC RELEASE

TubeTK is being developed as open-source software, released under the Apache 2.0 license. It is work-in-progress.

Overview

TubeTK Overview goes here...

The development of TubeTK is being funded, in part, by the following grants

1. the NIH/NIBIB sponsored "National Alliance of Medical Image Computing" (NA-MIC, PI: Kikinis) project
   • 1U54EB005149-01
   • http://www.na-mic.org
2. the DARPA sponsored "Trust in Integrated Circuits" (EXPOSE, PI: Bajura) program
   • USC/ISI Team
   • http://www.darpa.mil/MTO/Programs/trust/index.html
3. the NIH/NCI sponsored "Image Registration for Ultrasound-Based Neurosurgical Navigation" (NeuralNav, PI: Aylward, Wells)
   • 1R01CA138419-01
   • http://public.kitware.com/Wiki/NeuralNav

License

In summary, you are free to use, modify, and redistribute TubeTK for non-commercial and commercial uses. Details are provided in the header text of each file:

/*=========================================================================

Library:   TubeTK

Copyright 2010 Kitware Inc. 28 Corporate Drive,
Clifton Park, NY, 12065, USA.

All rights reserved. 

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

=========================================================================*/

Project Development Links

• Dashboard
  • https://www.kitware.com/CDash/index.php?project=TubeTK
  • Analytics on dashboard: https://www.google.com/analytics/settings/home#scid=15664873
• Git
  • Website: http://gitorious.org/tubetk/
  • Main Repository:
    • git clone git://gitorious.org/tubetk/tubetk.git
    • git push git@gitorious.org:tubetk/tubetk.git master
  • Playpen
    • git clone git://gitorious.org/tubetk/tubetk-playpen.git
    • git push git@gitorious.org:tubetk/tubetk-playpen.git
• Mantis
  • TBD
• Doxygen
  • TBD

Required third-party tools

• ITK
  • cvs -d :pserver:<YOURNAME>@itk.org:/cvsroot/Insight login ...
  • ITK recommends uuid-dev package on Linux

Optional third-party tools

• Slicer (our preferred method delivery tool)
  • svn co http://svn.slicer.org/Slicer3/trunk Slicer4
  • Requires Qt>=4.6.1 (note: 4.6.2 included with Ubuntu 10.04)
• VTK
  • git clone git://vtk.org/VTK.git VTK
• InsightApplications
  • cvs -d :pserver:<YOURNAME>@itk.org:/cvsroot/Insight co InsightApplications
  • ImageViewer requires FLTK 1.1.X and VTK
  • ImageColorViewer is a great way to view image registration results.
    • svn co http://svn.easysw.com/public/fltk/fltk/branches/branch-1.1/ fltk-1.1.10
    • http://qt.nokia.com/downloads
• DCMTK (does not compile on Linux via cmake...yet)
  • git clone http://git.dcmtk.org/dcmtk.git
• IPython
  • http://ipython.scipy.org/
  • Using IPython for scientific and parallel computing
    • https://www.osc.edu/cms/sip/

Project Administration Links

• Meeting notes

Documentation

• Design discussions
• Build instructions
• Developers guide
• Developers FAQ
• GIT Tips and Tricks
• Applications
  1. GUI Applications
  2. Command-line (CLI) Applications
     • Hessian Vesselness 2D
     • Extract Curves 2D
• Modules
  1. Pre-processing
     • TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch
  2. Object segmentation
  3. Tube extraction
  4. Data structures
  5. Topology analysis
  6. Editing
  7. Export
  8. OpenIGTLink
• References and related works
• Miscellaneous
  • Math formula editing in Wiki
  • General Wiki Editing FAQ

Developers

• Stephen Aylward
  • stephen.aylward@kitware.com
  • 919-969-6990 (Ext 300)
• Andinet Enquobaharie
• Casey Goodlett
• Patrick Reynolds