TubeTK/Developers FAQ: Difference between revisions
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= How do I enter equations in the Wiki? = | |||
= | * [http://en.wikipedia.org/wiki/Math_markup Math formula editing in Wiki] | ||
* [http://en.wikipedia.org/wiki/Wikipedia:FAQ/Editing General Wiki Editing FAQ] | |||
= How do I do coverage and profiling on linux? = | |||
* Coverage Measurement and Profiling | |||
** http://www.linuxjournal.com/node/6758/print | |||
= How do I write compressed images? = | |||
ITK, regretfully, doesn't write compressed images by default. You must add one line to your code, to write compressed images: | ITK, regretfully, doesn't write compressed images by default. You must add one line to your code, to write compressed images: | ||
<code> | |||
typename ImageWriterType::Pointer writer = ImageWriterType::New(); | |||
writer->SetFileName( outputVolume.c_str() ); | |||
writer->SetInput( cropFilter.GetOutput() ); | |||
writer->SetUseCompression( true ); // ADD THIS LINE | |||
</code> | |||
= | = What should I know about storing testing data? = | ||
== Input Images == | |||
* Store input images in TubeTK/Data | |||
* Store all images in a compressed format. | |||
* Don't put baseline images in TubeTK/Data. | |||
Baseline images should be stored with their tests. We'd like to keep TubeTK's modules as portable and self-contained as possible. We'll share input data by placing it in TubeTK/Data, but data specific to a particular test (e.g., baseline images) should be stored with the test. We've decided on the filesystem hierarchy | == Test Baseline Images == | ||
* Baseline images should be stored with their tests. We'd like to keep TubeTK's modules as portable and self-contained as possible. We'll share input data by placing it in TubeTK/Data, but data specific to a particular test (e.g., baseline images) should be stored with the test. We've decided on the filesystem hierarchy | |||
TubeTK/Applications/CLI/<myprogram>/Testing/Baselines | TubeTK/Applications/CLI/<myprogram>/Testing/Baselines | ||
for storing the baseline images for the tests for myprogram. | for storing the baseline images for the tests for myprogram. | ||
* Don't put baseline images in TubeTK/Data. | |||
Revision as of 20:06, 7 November 2010
How do I enter equations in the Wiki?
How do I do coverage and profiling on linux?
- Coverage Measurement and Profiling
How do I write compressed images?
ITK, regretfully, doesn't write compressed images by default. You must add one line to your code, to write compressed images:
typename ImageWriterType::Pointer writer = ImageWriterType::New();
writer->SetFileName( outputVolume.c_str() );
writer->SetInput( cropFilter.GetOutput() );
writer->SetUseCompression( true ); // ADD THIS LINE
What should I know about storing testing data?
Input Images
- Store input images in TubeTK/Data
- Store all images in a compressed format.
- Don't put baseline images in TubeTK/Data.
Test Baseline Images
- Baseline images should be stored with their tests. We'd like to keep TubeTK's modules as portable and self-contained as possible. We'll share input data by placing it in TubeTK/Data, but data specific to a particular test (e.g., baseline images) should be stored with the test. We've decided on the filesystem hierarchy
TubeTK/Applications/CLI/<myprogram>/Testing/Baselines
for storing the baseline images for the tests for myprogram.
- Don't put baseline images in TubeTK/Data.
