ITK/Release 3.2: Difference between revisions

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== Main Changes in this Release ==
== Main Changes in this Release ==


=== from Insight Journal to Review ===
=== From Insight Journal to Review ===


The following contributions from the Insight Journal were moved into the toolkit:
The following contributions from the Insight Journal were moved into the toolkit:
Line 12: Line 12:
# Finding regional extrema - methods and performance [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=65]  (Shepherd: Andinet Enquobahrie) [now in CVS Review]
# Finding regional extrema - methods and performance [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=65]  (Shepherd: Andinet Enquobahrie) [now in CVS Review]
# Neural Networks IO [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=93]  (Shepherd: Stephen Aylward) [now in CVS Review]
# Neural Networks IO [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=93]  (Shepherd: Stephen Aylward) [now in CVS Review]
# Contour Extractor 2D [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=72]  (Shepherd: Andinet Enquobahrie) [now in CVS Review]
# Contour Extractor 2D [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=72]  (Shepherd: Andinet Enquobahrie) [now in CVS Review]
# Image projections along an axis [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=71]  (Shepherd: Andinet Enquobahrie) [now in CVS Review]
# Image projections along an axis [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=71]  (Shepherd: Andinet Enquobahrie) [now in CVS Review]
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# Using a mask to decrease computation for Spatial Object to image [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=117] (Shepherd: Julien Jomier)
# Using a mask to decrease computation for Spatial Object to image [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=117] (Shepherd: Julien Jomier)
# Conformal Flattening ITK Filter [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=112]  (Shepherd: Sylvain Jaume) [now in CVS Review]
# Conformal Flattening ITK Filter [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=112]  (Shepherd: Sylvain Jaume) [now in CVS Review]
# Improving performance of morphological reconstruction [http://insight-journal.org/InsightJournalManager/view_reviews.php?back=publications.php%3Fjournalid%3D4%26order%3Drating%26revision_display%3Dcombined&pubid=76]
# Optimization of connected component labelling [http://insight-journal.org/InsightJournalManager/view_reviews.php?back=publications.php%3Fjournalid%3D4%26order%3Drating%26revision_display%3Dcombined&pubid=75]


=== from Review to permanent location ===
=== From Review to permanent location ===
The following contributions were moved from the Review directory to their permanent location
The following contributions were moved from the Review directory to their permanent location


# Probability Distributions for the Insight Toolkit [http://www.insight-journal.org/InsightJournalManager/view_reviews.php?back=admin_publications_toolkits.php&pubid=68] (Shepherd: Stephen Aylward) [now in CVS Review]
=== Replacing code copyrighted by Numerical Recipes ===
It was found that code copyrighted by Numerical Recipes was being used in the toolkit in the two following places:
# Insight/Utilities/vxl/core/vcl/algo/vnl_brent.cxx
# Insight/Code/Numerics/itkPowellOptimizer.cxx
The offending code was removed from the first file and the Vxl developers were notified. They are working in providing replacement code. The offending code from the itkPowellOptimizer has been replaced with code from the file fminbr.f from www.netlig.org, and a brand new implementation of the bracketing algorithm based on the description of the golden search method available in the Wikipedia.


== New Classes in this Release ==
== New Classes in this Release ==
Line 176: Line 187:
Utilities/kwsys/testAutoPtr
Utilities/kwsys/testAutoPtr
</pre>
</pre>
{{ITK/Template/Footer}}

Latest revision as of 21:13, 11 February 2012

This release covers the period November 13, 2006 through March 11, 2007

Main Changes in this Release

From Insight Journal to Review

The following contributions from the Insight Journal were moved into the toolkit:

  1. Improving features binary erode and dilate [1] (Shepherd: Gaetan Lehman) [now in CVS]
  2. An ITK Filter for Bayesian Segmentation: itkBayesianClassifierImageFilter [2] (Shepherd: Karthik Krishnan)
  3. Watershed transform [3] (Shepherd: Gaetan Lehman)
  4. Label Overlay [4] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  5. Finding regional extrema - methods and performance [5] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  6. Neural Networks IO [6] (Shepherd: Stephen Aylward) [now in CVS Review]
  7. Contour Extractor 2D [7] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  8. Image projections along an axis [8] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  9. itk Quad Mesh [9] (Shepherd: Sylvain Jaume) [data structures now in CVS Review]
  10. Using a mask to decrease computation for Spatial Object to image [10] (Shepherd: Julien Jomier)
  11. Conformal Flattening ITK Filter [11] (Shepherd: Sylvain Jaume) [now in CVS Review]
  12. Improving performance of morphological reconstruction [12]
  13. Optimization of connected component labelling [13]

From Review to permanent location

The following contributions were moved from the Review directory to their permanent location

  1. Probability Distributions for the Insight Toolkit [14] (Shepherd: Stephen Aylward) [now in CVS Review]

Replacing code copyrighted by Numerical Recipes

It was found that code copyrighted by Numerical Recipes was being used in the toolkit in the two following places:

  1. Insight/Utilities/vxl/core/vcl/algo/vnl_brent.cxx
  2. Insight/Code/Numerics/itkPowellOptimizer.cxx

The offending code was removed from the first file and the Vxl developers were notified. They are working in providing replacement code. The offending code from the itkPowellOptimizer has been replaced with code from the file fminbr.f from www.netlig.org, and a brand new implementation of the bracketing algorithm based on the description of the golden search method available in the Wikipedia.

New Classes in this Release


Code/BasicFilters/itkConnectedComponentAlgorithm
Code/BasicFilters/itkImageToVectorImageFilter
Code/BasicFilters/itkReconstructionImageFilter

Code/Numerics/Statistics/d1ma
Code/Numerics/Statistics/d1mach.f
Code/Numerics/Statistics/d9gmit
Code/Numerics/Statistics/d9gmit.f
Code/Numerics/Statistics/d9lgic
Code/Numerics/Statistics/d9lgic.f
Code/Numerics/Statistics/d9lgit
Code/Numerics/Statistics/d9lgit.f
Code/Numerics/Statistics/d9lgmc
Code/Numerics/Statistics/d9lgmc.f
Code/Numerics/Statistics/dbetai
Code/Numerics/Statistics/dbetai.f
Code/Numerics/Statistics/dcsevl
Code/Numerics/Statistics/dcsevl.f
Code/Numerics/Statistics/dgami
Code/Numerics/Statistics/dgami.f
Code/Numerics/Statistics/dgamit
Code/Numerics/Statistics/dgamit.f
Code/Numerics/Statistics/dgamlm
Code/Numerics/Statistics/dgamlm.f
Code/Numerics/Statistics/dgamma
Code/Numerics/Statistics/dgamma.f
Code/Numerics/Statistics/dgamr
Code/Numerics/Statistics/dgamr.f
Code/Numerics/Statistics/d_int
Code/Numerics/Statistics/dlbeta
Code/Numerics/Statistics/dlbeta.f
Code/Numerics/Statistics/dlgams
Code/Numerics/Statistics/dlgams.f
Code/Numerics/Statistics/dlngam
Code/Numerics/Statistics/dlngam.f
Code/Numerics/Statistics/dlnrel
Code/Numerics/Statistics/dlnrel.f
Code/Numerics/Statistics/d_mod
Code/Numerics/Statistics/initds
Code/Numerics/Statistics/initds.f
Code/Numerics/Statistics/itkChiSquareDistribution
Code/Numerics/Statistics/itkGaussianDistribution
Code/Numerics/Statistics/itkImageToListGenerator
Code/Numerics/Statistics/itkProbabilityDistribution
Code/Numerics/Statistics/itkTDistribution
Code/Numerics/Statistics/xermsg

Code/Review/itkBinaryProjectionImageFilter
Code/Review/itkBinaryThresholdProjectionImageFilter
Code/Review/itkConformalFlatteningMeshFilter
Code/Review/itkContourExtractor2DImageFilter
Code/Review/itkGeometricalQuadEdge
Code/Review/itkImageToPathFilter
Code/Review/itkLabelOverlayImageFilter
Code/Review/itkLabelToRGBFunctor
Code/Review/itkLabelToRGBImageFilter
Code/Review/itkMaximumProjectionImageFilter
Code/Review/itkMeanProjectionImageFilter
Code/Review/itkMedianProjectionImageFilter
Code/Review/itkMinimumProjectionImageFilter
Code/Review/itkMorphologicalWatershedFromMarkersImageFilter
Code/Review/itkMorphologicalWatershedImageFilter
Code/Review/itkNeuralNetworkFileReader
Code/Review/itkNeuralNetworkFileWriter
Code/Review/itkProjectionImageFilter
Code/Review/itkQuadEdge
Code/Review/itkQuadEdgeMe
Code/Review/itkQuadEdgeMesh
Code/Review/itkQuadEdgeMeshBaseIterator
Code/Review/itkQuadEdgeMeshBoundaryEdgesMeshFunction
Code/Review/itkQuadEdgeMeshFrontIterator
Code/Review/itkQuadEdgeMeshLineCell
Code/Review/itkQuadEdgeMeshMacro
Code/Review/itkQuadEdgeMeshPoint
Code/Review/itkQuadEdgeMeshPolygonCell
Code/Review/itkQuadEdgeMeshTopologyChecker
Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter
Code/Review/itkQuadEdgeMeshTraits
Code/Review/itkRegionalMaximaImageFilter
Code/Review/itkRegionalMinimaImageFilter
Code/Review/itkStandardDeviationProjectionImageFilter
Code/Review/itkSumProjectionImageFilter
Code/Review/itkValuedRegionalExtremaImageFilter
Code/Review/itkValuedRegionalMaximaImageFilter
Code/Review/itkValuedRegionalMinimaImageFilter
Code/Review/itkVTKPolyDataReader
Code/Review/itkVTKPolyDataWriter

New Tests in this Release


Testing/Code/BasicFilters/itkBinaryDilateImageFilterTest3
Testing/Code/BasicFilters/itkBinaryErodeImageFilterTest3

Testing/Code/IO/itkVTKImageIOTest2
Testing/Code/IO/testMetaCommand

Testing/Code/Numerics/Statistics/itkChiSquareDistributionTest
Testing/Code/Numerics/Statistics/itkGaussianDistributionTest
Testing/Code/Numerics/Statistics/itkImageToListGeneratorTest
Testing/Code/Numerics/Statistics/itkStatisticsHeaderTest
Testing/Code/Numerics/Statistics/itkTDistributionTest

Testing/Code/Review/itkBinaryProjectionImageFilterTest
Testing/Code/Review/itkBinaryThresholdProjectionImageFilterTest
Testing/Code/Review/itkConformalFlatteningMeshFilterTest
Testing/Code/Review/itkContourExtractor2DImageFilterTest
Testing/Code/Review/itkGeometricalQuadEdgeTest1
Testing/Code/Review/itkLabelOverlayImageFilterTest
Testing/Code/Review/itkMaximumProjectionImageFilterTest
Testing/Code/Review/itkMaximumProjectionImageFilterTest2
Testing/Code/Review/itkMaximumProjectionImageFilterTest3
Testing/Code/Review/itkMeanProjectionImageFilterTest
Testing/Code/Review/itkMedianProjectionImageFilterTest
Testing/Code/Review/itkMinimumProjectionImageFilterTest
Testing/Code/Review/itkMorphologicalWatershedFromMarkersImageFilterTest
Testing/Code/Review/itkMorphologicalWatershedImageFilterTest
Testing/Code/Review/itkNeuralNetworkIOTest
Testing/Code/Review/itkProjectionImageFilterTest
Testing/Code/Review/itkQuadEdgeMeshAddFaceTest1
Testing/Code/Review/itkQuadEdgeMeshAddFaceTest2
Testing/Code/Review/itkQuadEdgeMeshBasicLayerTest
Testing/Code/Review/itkQuadEdgeMeshDeleteEdgeTest
Testing/Code/Review/itkQuadEdgeMeshFrontIteratorTest
Testing/Code/Review/itkQuadEdgeMeshPointTest1
Testing/Code/Review/itkQuadEdgeMeshTest1
Testing/Code/Review/itkQuadEdgeMeshTest2
Testing/Code/Review/itkQuadEdgeMeshTest3
Testing/Code/Review/itkQuadEdgeTest1
Testing/Code/Review/itkRegionalMaximaImageFilterTest
Testing/Code/Review/itkRegionalMaximaImageFilterTest2
Testing/Code/Review/itkRegionalMinimaImageFilterTest
Testing/Code/Review/itkRegionalMinimaImageFilterTest2
Testing/Code/Review/itkStandardDeviationProjectionImageFilterTest
Testing/Code/Review/itkSumProjectionImageFilterTest
Testing/Code/Review/itkValuedRegionalMaximaImageFilterTest
Testing/Code/Review/itkValuedRegionalMinimaImageFilterTest
Testing/Code/Review/itkVTKPolyDataReaderTest
Testing/Code/Review/itkVTKPolyDataWriterTest

New Examples in this Release


Examples/IO/itk.d

New Utilities in this Release

Utilities/kwsys/testAutoPtr


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