ITK/Release 2.0: Difference between revisions

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= Introducing GDCM as DICOM reader/writer =
= Introducing GDCM as DICOM reader/writer =
Until version 2.0, ITK only natively supported reading DICOM image files.  New in v2.0 is GDCM, short for "Grass roots DICOM", a library dedicated library for reading, parsing '''and writing''' DICOM image data.  [http://www.creatis.insa-lyon.fr/Public/Gdcm/Main.html GDCM] is developed by the [http://www.creatis.insa-lyon.fr/ Creatis group] at INSA Lyon, France.
GDCM supports Part 5 of the DICOM standard, relating to image files (and not the rest of the DICOM spec, such as networking, etc).  The supported formats are:
* ACR-NEMA version 1 and 2
* Dicom version 3.0 (including various encodings of jpeg, RLE)
; Class Reference : [http://www.itk.org/Doxygen/html/classitk_1_1GDCMImageIO.html GDCMImageIO], [http://www.itk.org/Doxygen/html/classitk_1_1GDCMSeriesFileNames.html GDCMSeriesFileNames]
; Examples : (None)
= New itkVesselTubeSpatialObject with metaIO file format to support vessel representation =
= New itkVesselTubeSpatialObject with metaIO file format to support vessel representation =
= New itkDTITubeSpatialObject with metaIO file format to support DTI tracts representation and reading/writing of DTI data =
= New itkDTITubeSpatialObject with metaIO file format to support DTI tracts representation and reading/writing of DTI data =
= New Classes =
Algorithms/itkBinaryPruningImageFilter
Algorithms/itkBinaryThinningImageFilter
Algorithms/itkBioCell
Algorithms/itkBioCellularAggregate
Algorithms/itkBioGenome
Algorithms/itkEuclideanDistancePointMetric
Algorithms/itkKappaStatisticImageToImageMetric
Algorithms/itkOtsuThresholdImageFilter
Algorithms/itkScalarImageKmeansImageFilter
Algorithms/itkSimplexMeshVolumeCalculator


BasicFilters/itkAbsoluteValueDifferenceImageFilter
This release covers the period August 10, 2004 through February 4, 2005
BasicFilters/itkComplexToImaginaryImageFilter
== New Classes in this Release ==
BasicFilters/itkComplexToRealImageFilter
<pre>
BasicFilters/itkGrayscaleMorphologicalClosingImageFilter
Code/Algorithms/itkBinaryPruningImageFilter
BasicFilters/itkGrayscaleMorphologicalOpeningImageFilter
Code/Algorithms/itkBinaryThinningImageFilter
BasicFilters/itkMaskNegatedImageFilter
Code/Algorithms/itkBioCell
BasicFilters/itkSimpleContourExtractorImageFilter
Code/Algorithms/itkBioCellBase
BasicFilters/itkVotingBinaryHoleFillingImageFilter
Code/Algorithms/itkBioCellularAggregate
BasicFilters/itkVotingBinaryImageFilter
Code/Algorithms/itkBioCellularAggregateBase
BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilter
Code/Algorithms/itkBioGenome
BasicFilters/itkWarpMeshFilter
Code/Algorithms/itkEuclideanDistancePointMetr
Code/Algorithms/itkEuclideanDistancePointMetric
Code/Algorithms/itkKappaStatisticImageToImageMetr
Code/Algorithms/itkKappaStatisticImageToImageMetric
Code/Algorithms/itkOtsuMultipleThresholdsImageFilter
Code/Algorithms/itkScalarImageKmeansImageFilter
Code/Algorithms/itkSimplexMeshVolumeCalculator
 
Code/BasicFilters/itkComplexToImaginaryImageFilter
Code/BasicFilters/itkComplexToRealImageFilter
Code/BasicFilters/itkConstrainedValueAdditionImageFilter
Code/BasicFilters/itkConstrainedValueDifferenceImageFilter
Code/BasicFilters/itkContourDirectedMeanDistanceImageFilter
Code/BasicFilters/itkContourMeanDistanceImageFilter
Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilter
Code/BasicFilters/itkGrayscaleMorphologicalClosingImageFilter
Code/BasicFilters/itkGrayscaleMorphologicalOpeningImageFilter
Code/BasicFilters/itkJoinSeriesImageFilter
Code/BasicFilters/itkMaskNegatedImageFilter
Code/BasicFilters/itkSignedDanielssonDistanceMapImageFilter
Code/BasicFilters/itkSimpleContourExtractorImageFilter
Code/BasicFilters/itkVotingBinaryHoleFillingImageFilter
Code/BasicFilters/itkVotingBinaryImageFilter
Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilter
Code/BasicFilters/itkWarpMeshFilter
 
Code/Common/itkComplexToImaginaryImageAdaptor
Code/Common/itkComplexToRealImageAdaptor
Code/Common/itkPhasedArray3DSpecialCoordinatesImage
Code/Common/itkSimpleFilterWatcher
Code/Common/itkSpecialCoordinatesImage
Code/Common/itkVectorNearestNeighborInterpolateImageFunction


Common/itkChildTreeIterator
Code/IO/itkArchetypeSeriesFileNames
Common/itkComplexToImaginaryImageAdaptor
Common/itkComplexToRealImageAdaptor
Common/itkInOrderTreeIterator
Common/itkLeafTreeIterator
Common/itkLevelOrderTreeIterator
Common/itkPhasedArray3DSpecialCoordinatesImage
Common/itkPostOrderTreeIterator
Common/itkPreOrderTreeIterator
Common/itkRootTreeIterator
Common/itkSimpleFilterWatcher
Common/itkSpecialCoordinatesImage
Common/itkTreeChangeEvent
Common/itkTreeContainer
Common/itkTreeContainerBase
Common/itkTreeIteratorBase
Common/itkTreeIteratorClone
Common/itkTreeNode
Common/itkVectorNearestNeighborInterpolateImageFunction


IO/itkArchetypeSeriesFileNames
Code/Numerics/itkPowellOptimizer
IO/itkNrrdImageIO


Patented/itkActiveShapeModelCalculator
Code/SpatialObject/itkArrowSpatialObject
Patented/itkActiveShapeModelGradientSearchMethod
Code/SpatialObject/itkCylinderSpatialObject
Patented/itkSimpleFuzzyConnectednessImageFilterBase
Code/SpatialObject/itkDTITubeSpatialObject
Patented/itkSimpleFuzzyConnectednessRGBImageFilter
Code/SpatialObject/itkDTITubeSpatialObjectPoint
Patented/itkSimpleFuzzyConnectednessScalarImageFilter
Code/SpatialObject/itkMetaArrowConverter
Patented/itkVectorFuzzyConnectednessImageFilter
Code/SpatialObject/itkMetaDTITubeConverter
Code/SpatialObject/itkMetaVesselTubeConverter
Code/SpatialObject/itkVesselTubeSpatialObject
Code/SpatialObject/itkVesselTubeSpatialObjectPoint


SpatialObject/itkAffineGeometryFrame
Code/Patented/CMakeLists.txt
SpatialObject/itkArrowSpatialObject
Code/Patented/itkActiveShapeModelCalculator
SpatialObject/itkDTITubeSpatialObject
Code/Patented/itkActiveShapeModelGradientSearchMethod
SpatialObject/itkDTITubeSpatialObjectPoint
Code/Patented/itkSimpleFuzzyConnectednessImageFilterBase
SpatialObject/itkMetaArrowConverter
Code/Patented/itkSimpleFuzzyConnectednessRGBImageFilter
SpatialObject/itkMetaDTITubeConverter
Code/Patented/itkSimpleFuzzyConnectednessScalarImageFilter
SpatialObject/itkMetaVesselTubeConverter
Code/Patented/itkVectorFuzzyConnectednessImageFilter
SpatialObject/itkSpatialObjectTreeContainer
</pre>
SpatialObject/itkSpatialObjectTreeNode
== New Tests in this Release ==
SpatialObject/itkVesselTubeSpatialObject
<pre>
SpatialObject/itkVesselTubeSpatialObjectPoint
Testing/Code/Common/itkCenteredEuler3DTransformTest
Testing/Code/Common/itkPhasedArray3DSpecialCoordinatesImageTest
Testing/Code/Common/itkSizeTest


= New Examples =
Testing/Code/BasicFilters/itkComplexToImaginaryFilterAndAdaptorTest
DataRepresentation/Image/ImageExamples
Testing/Code/BasicFilters/itkComplexToRealFilterAndAdaptorTest
DataRepresentation/Mesh/MeshExamples
Testing/Code/BasicFilters/itkConstrainedValueAdditionImageFilterTest
Testing/Code/BasicFilters/itkConstrainedValueDifferenceImageFilterTest
Testing/Code/BasicFilters/itkContourDirectedMeanDistanceImageFilterTest
Testing/Code/BasicFilters/itkContourMeanDistanceImageFilterTest
Testing/Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilterTest
Testing/Code/BasicFilters/itkGrayscaleMorphologicalClosingImageFilterTest
Testing/Code/BasicFilters/itkGrayscaleMorphologicalOpeningImageFilterTest
Testing/Code/BasicFilters/itkJoinSeriesImageFilterTest
Testing/Code/BasicFilters/itkMaskNegatedImageFilterTest
Testing/Code/BasicFilters/itkResamplePhasedArray3DSpecialCoordinatesImageTest
Testing/Code/BasicFilters/itkSignedDanielssonDistanceMapImageFilterTest
Testing/Code/BasicFilters/itkSimpleContourExtractorImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryHoleFillingImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest
Testing/Code/BasicFilters/itkWarpMeshFilterTest


Filtering/AntiAliasBinaryImageFilter
Testing/Code/IO/itkArchetypeSeriesFileNamesTest
Filtering/BinaryMedianImageFilter
Testing/Code/IO/itkImageFileWriterTest
Filtering/FFTImageFilter
Filtering/LaplacianImageFilter.py
Filtering/MorphologicalImageEnhancement
Filtering/OtsuThresholdImageFilter
Filtering/ResampleImageFilter7
Filtering/ResampleImageFilter8
Filtering/ResampleImageFilter9
Filtering/VotingBinaryHoleFillingImageFilter
Filtering/VotingBinaryIterativeHoleFillingImageFilter


IO/DicomImageReadChangeHeaderWrite
Testing/Code/Algorithms/itkAlgorithmsPrintTest4
IO/DicomImageReadPrintTags
Testing/Code/Algorithms/itkAlgorithmsPrintTests
IO/DicomImageReadWrite
Testing/Code/Algorithms/itkAlgorithmsTests3
IO/DicomSeriesReadImageWrite2
Testing/Code/Algorithms/itkBinaryThinningImageFilterTest
IO/DicomSeriesReadPrintTags
Testing/Code/Algorithms/itkBioCellTest
IO/DicomSeriesReadSeriesWrite
Testing/Code/Algorithms/itkBioCellularAggregateTest
IO/DicomSliceRead.java
Testing/Code/Algorithms/itkBioGenomeTest
IO/DicomSliceRead.py
Testing/Code/Algorithms/itkKappaStatisticImageToImageMetricTest
IO/DicomSliceRead.tcl
Testing/Code/Algorithms/itkMatchCardinalityImageToImageMetricTest
Testing/Code/Algorithms/itkOtsuMultipleThresholdsImageFilterTest
Testing/Code/Algorithms/itkScalarImageKmeansImageFilterTest
Testing/Code/Algorithms/itkSimplexMeshVolumeCalculatorTest


Patented/FuzzyConnectednessImageFilter
Testing/Code/Numerics/itkPowellOptimizerTest
Patented/HybridSegmentationFuzzyVoronoi
Patented/IterativeClosestPoint1
Patented/IterativeClosestPoint2
Patented/IterativeClosestPoint3


Registration/DeformableRegistration6
Testing/Code/SpatialObject/itkArrowSpatialObjectTest
Registration/DeformableRegistration7
Testing/Code/SpatialObject/itkCylinderSpatialObjectTest
Registration/DeformableRegistration8
Testing/Code/SpatialObject/itkSpatialObjectTests2
Registration/ImageRegistration14


Segmentation/CellularSegmentation1
Testing/Code/Patented/CMakeLists.txt
Segmentation/CurvesLevelSetImageFilter
Testing/Code/Patented/itkActiveShapeModelCalculatorTest
Segmentation/RelabelComponentImageFilter
Testing/Code/Patented/itkPatentedHeaderTest
Segmentation/VoronoiSegmentation.java
Testing/Code/Patented/itkPatentedPrintTest
Segmentation/VoronoiSegmentation.py
Testing/Code/Patented/itkPatentedTests
Segmentation/VoronoiSegmentation.tcl
Testing/Code/Patented/itkSimpleFuzzyConnectednessScalarImageFilterTest
Segmentation/WatershedSegmentation1.java
Testing/Code/Patented/itkVectorFuzzyConnectednessImageFilterTest
Segmentation/WatershedSegmentation1.tcl
</pre>
== New Examples in this Release ==
<pre>
Examples/DataRepresentation/Image/ImageExamples
Examples/DataRepresentation/Mesh/MeshExamples


Statistics/ImageEntropy1
Examples/Filtering/AntiAliasBinaryImageFilter
Statistics/ImageHistogram4
Examples/Filtering/BinaryMedianImageFilter
Statistics/ImageMutualInformation1
Examples/Filtering/FFTImageFilter
Statistics/ScalarImageKmeansClassifier
Examples/Filtering/FilteringExamples3
Statistics/ScalarImageKmeansModelEstimator
Examples/Filtering/FilteringExamples4
Statistics/ScalarImageMarkovRandomField1
Examples/Filtering/MorphologicalImageEnhancement
Examples/Filtering/OtsuMultipleThresholdImageFilter
Examples/Filtering/OtsuThresholdImageFilter
Examples/Filtering/ResampleImageFilter7
Examples/Filtering/ResampleImageFilter8
Examples/Filtering/ResampleImageFilter9
Examples/Filtering/VotingBinaryHoleFillingImageFilter
Examples/Filtering/VotingBinaryIterativeHoleFillingImageFilter


= New Tests =
Examples/IO/DicomImageReadChangeHeaderWrite
Algorithms/itkAlgorithmsPrintTest4
Examples/IO/DicomImageReadPrintTags
Algorithms/itkAlgorithmsPrintTests
Examples/IO/DicomImageReadWrite
Algorithms/itkAlgorithmsTests3
Examples/IO/DicomSeriesReadPrintTags
Algorithms/itkBioCellTest
Examples/IO/DicomSeriesReadSeriesWrite
Algorithms/itkBioCellularAggregateTest
Examples/IO/DicomSliceRead.java
Algorithms/itkBioGenomeTest
Examples/IO/DicomSliceRead.py
Algorithms/itkFilterWatcher
Examples/IO/DicomSliceRead.tcl
Algorithms/itkKappaStatisticImageToImageMetricTest
Algorithms/itkMatchCardinalityImageToImageMetricTest
Algorithms/itkOtsuThresholdImageFilterTest
Algorithms/itkRayCastInterpolateImageFunctionTest
Algorithms/itkScalarImageKmeansImageFilterTest
Algorithms/itkSimplexMeshVolumeCalculatorTest


BasicFilters/itkAbsoluteValueDifferenceImageFilterTest
Examples/Patented/CMakeLists.txt
BasicFilters/itkComplexToImaginaryFilterAndAdaptorTest
Examples/Patented/FuzzyConnectednessImageFilter
BasicFilters/itkComplexToRealFilterAndAdaptorTest
Examples/Patented/HybridSegmentationFuzzyVoronoi
BasicFilters/itkGrayscaleMorphologicalClosingImageFilterTest
Examples/Patented/IterativeClosestPoint1
BasicFilters/itkGrayscaleMorphologicalOpeningImageFilterTest
Examples/Patented/IterativeClosestPoint2
BasicFilters/itkMaskNegatedImageFilterTest
Examples/Patented/IterativeClosestPoint3
BasicFilters/itkResamplePhasedArray3DSpecialCoordinatesImageTest
Examples/Patented/PatentedExamples
BasicFilters/itkVotingBinaryHoleFillingImageFilterTest
BasicFilters/itkVotingBinaryImageFilterTest
BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest
BasicFilters/itkWarpMeshFilterTest


Common/itkCenteredEuler3DTransformTest
Examples/Registration/DeformableRegistration7
Common/itkDirectoryTest
Examples/Registration/DeformableRegistration8
Common/itkImageTest
Examples/Registration/DeformationFieldJacobian
Common/itkPhasedArray3DSpecialCoordinatesImageTest
Examples/Registration/RegistrationExamples8
Common/itkSizeTest
Common/itkTreeContainerTest
Common/itkTreeContainerTest2


IO/itkArchetypeSeriesFileNamesTest
Examples/Statistics/ImageHistogram4
IO/itkImageFileWriterTest
Examples/Statistics/ScalarImageKmeansClassifier
IO/itkNrrdImageIOTest
Examples/Statistics/ScalarImageKmeansModelEstimator
IO/itkNrrdImageIOTest
Examples/Statistics/ScalarImageMarkovRandomField1


Patented/itkActiveShapeModelCalculatorTest
</pre>
Patented/itkPatentedHeaderTest
== New Utilities in this Release ==
Patented/itkPatentedPrintTest
<pre>
Patented/itkPatentedTests
Utilities/gdcm/AUTHORS
Patented/itkSimpleFuzzyConnectednessScalarImageFilterTest
Utilities/gdcm/ChangeLog
Patented/itkVectorFuzzyConnectednessImageFilterTest
Utilities/gdcm/CMakeLists.txt
Utilities/gdcm/DEVELOPPER
Utilities/gdcm/Dicts/CMakeLists.txt
Utilities/gdcm/Dicts/DicomDir.d
Utilities/gdcm/Dicts/dicomTS.d
Utilities/gdcm/Dicts/dicomV3.d
Utilities/gdcm/Dicts/dicomVR.d
Utilities/gdcm/Dicts/README
Utilities/gdcm/gdcmConfigure.h.in
Utilities/gdcm/gdcm.spec.in
Utilities/gdcm/INSTALL
Utilities/gdcm/PACKAGER
Utilities/gdcm/README
Utilities/gdcm/README.ITK.txt
Utilities/gdcm/src/CMakeLists.txt
Utilities/gdcm/src/gdcm
Utilities/gdcm/src/gdcmBinEntry
Utilities/gdcm/src/gdcmCommon
Utilities/gdcm/src/gdcmDebug
Utilities/gdcm/src/gdcmDefaultDicts.cxx.in
Utilities/gdcm/src/gdcmDicomDir
Utilities/gdcm/src/gdcmDicomDirElement
Utilities/gdcm/src/gdcmDicomDirImage
Utilities/gdcm/src/gdcmDicomDirMeta
Utilities/gdcm/src/gdcmDicomDirObject
Utilities/gdcm/src/gdcmDicomDirPatient
Utilities/gdcm/src/gdcmDicomDirSerie
Utilities/gdcm/src/gdcmDicomDirStudy
Utilities/gdcm/src/gdcmDict
Utilities/gdcm/src/gdcmDictEntry
Utilities/gdcm/src/gdcmDictSet
Utilities/gdcm/src/gdcmDirList
Utilities/gdcm/src/gdcmDocEntry
Utilities/gdcm/src/gdcmDocEntrySet
Utilities/gdcm/src/gdcmDocument
Utilities/gdcm/src/gdcmElementSet
Utilities/gdcm/src/gdcmException
Utilities/gdcm/src/gdcmFile
Utilities/gdcm/src/gdcmGlobal
Utilities/gdcm/src/gdcmJpeg
Utilities/gdcm/src/gdcmJpeg12
Utilities/gdcm/src/gdcmJpeg16
Utilities/gdcm/src/gdcmJpeg2000
Utilities/gdcm/src/gdcmJpeg8
Utilities/gdcm/src/gdcmJPEGFragment
Utilities/gdcm/src/gdcmJPEGFragmentsInfo
Utilities/gdcm/src/gdcmRLEFrame
Utilities/gdcm/src/gdcmRLEFramesInfo
Utilities/gdcm/src/gdcmSeqEntry
Utilities/gdcm/src/gdcmSQItem
Utilities/gdcm/src/gdcmTS
Utilities/gdcm/src/gdcmUtil
Utilities/gdcm/src/gdcmValEntry
Utilities/gdcm/src/gdcmVR
Utilities/gdcm/src/jdatadst
Utilities/gdcm/src/jdatas
Utilities/itkjpeg/12/CMakeLists.txt
Utilities/itkjpeg/16/CMakeLists.txt
Utilities/itkjpeg/8/CMakeLists.txt
Utilities/itkjpeg/change.log
Utilities/itkjpeg/CMakeLists.txt
Utilities/itkjpeg/COPYRIGHT.dcmtk
Utilities/itkjpeg/filelist.d
Utilities/itkjpeg/install.d
Utilities/itkjpeg/jaricom
Utilities/itkjpeg/jcapimin
Utilities/itkjpeg/jcapistd
Utilities/itkjpeg/jcari
Utilities/itkjpeg/jccoefct
Utilities/itkjpeg/jccolor
Utilities/itkjpeg/jcdctmgr
Utilities/itkjpeg/jcdiffct
Utilities/itkjpeg/jchuff
Utilities/itkjpeg/jcinit
Utilities/itkjpeg/jclhuff
Utilities/itkjpeg/jclossls
Utilities/itkjpeg/jclossy
Utilities/itkjpeg/jcmainct
Utilities/itkjpeg/jcmarker
Utilities/itkjpeg/jcmaster
Utilities/itkjpeg/jcodec
Utilities/itkjpeg/jcomapi
Utilities/itkjpeg/jconfig.d
Utilities/itkjpeg/jconfig.h.in
Utilities/itkjpeg/jcparam
Utilities/itkjpeg/jcphuff
Utilities/itkjpeg/jcpred
Utilities/itkjpeg/jcprepct
Utilities/itkjpeg/jcsample
Utilities/itkjpeg/jcscale
Utilities/itkjpeg/jcshuff
Utilities/itkjpeg/jctrans
Utilities/itkjpeg/jdapimin
Utilities/itkjpeg/jdapistd
Utilities/itkjpeg/jdari
Utilities/itkjpeg/jdatadst
Utilities/itkjpeg/jdatasrc
Utilities/itkjpeg/jdcoefct
Utilities/itkjpeg/jdcolor
Utilities/itkjpeg/jdct
Utilities/itkjpeg/jddctmgr
Utilities/itkjpeg/jddiffct
Utilities/itkjpeg/jdhuff
Utilities/itkjpeg/jdinput
Utilities/itkjpeg/jdlhuff
Utilities/itkjpeg/jdlossls
Utilities/itkjpeg/jdlossy
Utilities/itkjpeg/jdmainct
Utilities/itkjpeg/jdmarker
Utilities/itkjpeg/jdmaster
Utilities/itkjpeg/jdmerge
Utilities/itkjpeg/jdphuff
Utilities/itkjpeg/jdpostct
Utilities/itkjpeg/jdpred
Utilities/itkjpeg/jdsample
Utilities/itkjpeg/jdscale
Utilities/itkjpeg/jdshuff
Utilities/itkjpeg/jdtrans
Utilities/itkjpeg/jerror
Utilities/itkjpeg/jfdctflt
Utilities/itkjpeg/jfdctfst
Utilities/itkjpeg/jfdctint
Utilities/itkjpeg/jidctflt
Utilities/itkjpeg/jidctfst
Utilities/itkjpeg/jidctint
Utilities/itkjpeg/jidctred
Utilities/itkjpeg/jinclude
Utilities/itkjpeg/jlossls
Utilities/itkjpeg/jlossy
Utilities/itkjpeg/jmemmgr
Utilities/itkjpeg/jmemnobs
Utilities/itkjpeg/jmemsys
Utilities/itkjpeg/jmorecfg.h.in
Utilities/itkjpeg/jpegDllConfig.h.in
Utilities/itkjpeg/jpegint
Utilities/itkjpeg/jpeglib
Utilities/itkjpeg/jquant1
Utilities/itkjpeg/jquant2
Utilities/itkjpeg/jutils
Utilities/itkjpeg/jversion
Utilities/itkjpeg/libjpeg.d
Utilities/itkjpeg/mangle_jpeg12bits
Utilities/itkjpeg/mangle_jpeg16bits
Utilities/itkjpeg/mangle_jpeg8bits
Utilities/itkjpeg/.NoDartCoverage
Utilities/itkjpeg/README
Utilities/itkjpeg/README.GDCM.txt
Utilities/itkjpeg/README.ITK.txt
Utilities/itkjpeg/structure.d
Utilities/kwsys/CommandLineArguments
Utilities/kwsys/CommandLineArguments.hxx.in
Utilities/kwsys/testCommandLineArguments
Utilities/MetaIO/metaArrow
Utilities/MetaIO/metaDTITube
Utilities/MetaIO/metaVesselTube
Utilities/NrrdIO/itk_NrrdIO_mangle
Utilities/NrrdIO/.NoDartCoverage
</pre>


SpatialObject/itkAffineGeometryFrameTest
{{ITK/Template/Footer}}
SpatialObject/itkArrowSpatialObjectTest
SpatialObject/itkSpatialObjectTreeContainerTest

Latest revision as of 21:13, 11 February 2012

Introducing GDCM as DICOM reader/writer

Until version 2.0, ITK only natively supported reading DICOM image files. New in v2.0 is GDCM, short for "Grass roots DICOM", a library dedicated library for reading, parsing and writing DICOM image data. GDCM is developed by the Creatis group at INSA Lyon, France.

GDCM supports Part 5 of the DICOM standard, relating to image files (and not the rest of the DICOM spec, such as networking, etc). The supported formats are:

  • ACR-NEMA version 1 and 2
  • Dicom version 3.0 (including various encodings of jpeg, RLE)
Class Reference
GDCMImageIO, GDCMSeriesFileNames
Examples
(None)

New itkVesselTubeSpatialObject with metaIO file format to support vessel representation

New itkDTITubeSpatialObject with metaIO file format to support DTI tracts representation and reading/writing of DTI data

This release covers the period August 10, 2004 through February 4, 2005

New Classes in this Release

Code/Algorithms/itkBinaryPruningImageFilter
Code/Algorithms/itkBinaryThinningImageFilter
Code/Algorithms/itkBioCell
Code/Algorithms/itkBioCellBase
Code/Algorithms/itkBioCellularAggregate
Code/Algorithms/itkBioCellularAggregateBase
Code/Algorithms/itkBioGenome
Code/Algorithms/itkEuclideanDistancePointMetr
Code/Algorithms/itkEuclideanDistancePointMetric
Code/Algorithms/itkKappaStatisticImageToImageMetr
Code/Algorithms/itkKappaStatisticImageToImageMetric
Code/Algorithms/itkOtsuMultipleThresholdsImageFilter
Code/Algorithms/itkScalarImageKmeansImageFilter
Code/Algorithms/itkSimplexMeshVolumeCalculator

Code/BasicFilters/itkComplexToImaginaryImageFilter
Code/BasicFilters/itkComplexToRealImageFilter
Code/BasicFilters/itkConstrainedValueAdditionImageFilter
Code/BasicFilters/itkConstrainedValueDifferenceImageFilter
Code/BasicFilters/itkContourDirectedMeanDistanceImageFilter
Code/BasicFilters/itkContourMeanDistanceImageFilter
Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilter
Code/BasicFilters/itkGrayscaleMorphologicalClosingImageFilter
Code/BasicFilters/itkGrayscaleMorphologicalOpeningImageFilter
Code/BasicFilters/itkJoinSeriesImageFilter
Code/BasicFilters/itkMaskNegatedImageFilter
Code/BasicFilters/itkSignedDanielssonDistanceMapImageFilter
Code/BasicFilters/itkSimpleContourExtractorImageFilter
Code/BasicFilters/itkVotingBinaryHoleFillingImageFilter
Code/BasicFilters/itkVotingBinaryImageFilter
Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilter
Code/BasicFilters/itkWarpMeshFilter

Code/Common/itkComplexToImaginaryImageAdaptor
Code/Common/itkComplexToRealImageAdaptor
Code/Common/itkPhasedArray3DSpecialCoordinatesImage
Code/Common/itkSimpleFilterWatcher
Code/Common/itkSpecialCoordinatesImage
Code/Common/itkVectorNearestNeighborInterpolateImageFunction

Code/IO/itkArchetypeSeriesFileNames

Code/Numerics/itkPowellOptimizer

Code/SpatialObject/itkArrowSpatialObject
Code/SpatialObject/itkCylinderSpatialObject
Code/SpatialObject/itkDTITubeSpatialObject
Code/SpatialObject/itkDTITubeSpatialObjectPoint
Code/SpatialObject/itkMetaArrowConverter
Code/SpatialObject/itkMetaDTITubeConverter
Code/SpatialObject/itkMetaVesselTubeConverter
Code/SpatialObject/itkVesselTubeSpatialObject
Code/SpatialObject/itkVesselTubeSpatialObjectPoint

Code/Patented/CMakeLists.txt
Code/Patented/itkActiveShapeModelCalculator
Code/Patented/itkActiveShapeModelGradientSearchMethod
Code/Patented/itkSimpleFuzzyConnectednessImageFilterBase
Code/Patented/itkSimpleFuzzyConnectednessRGBImageFilter
Code/Patented/itkSimpleFuzzyConnectednessScalarImageFilter
Code/Patented/itkVectorFuzzyConnectednessImageFilter

New Tests in this Release

Testing/Code/Common/itkCenteredEuler3DTransformTest
Testing/Code/Common/itkPhasedArray3DSpecialCoordinatesImageTest
Testing/Code/Common/itkSizeTest

Testing/Code/BasicFilters/itkComplexToImaginaryFilterAndAdaptorTest
Testing/Code/BasicFilters/itkComplexToRealFilterAndAdaptorTest
Testing/Code/BasicFilters/itkConstrainedValueAdditionImageFilterTest
Testing/Code/BasicFilters/itkConstrainedValueDifferenceImageFilterTest
Testing/Code/BasicFilters/itkContourDirectedMeanDistanceImageFilterTest
Testing/Code/BasicFilters/itkContourMeanDistanceImageFilterTest
Testing/Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilterTest
Testing/Code/BasicFilters/itkGrayscaleMorphologicalClosingImageFilterTest
Testing/Code/BasicFilters/itkGrayscaleMorphologicalOpeningImageFilterTest
Testing/Code/BasicFilters/itkJoinSeriesImageFilterTest
Testing/Code/BasicFilters/itkMaskNegatedImageFilterTest
Testing/Code/BasicFilters/itkResamplePhasedArray3DSpecialCoordinatesImageTest
Testing/Code/BasicFilters/itkSignedDanielssonDistanceMapImageFilterTest
Testing/Code/BasicFilters/itkSimpleContourExtractorImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryHoleFillingImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest
Testing/Code/BasicFilters/itkWarpMeshFilterTest

Testing/Code/IO/itkArchetypeSeriesFileNamesTest
Testing/Code/IO/itkImageFileWriterTest

Testing/Code/Algorithms/itkAlgorithmsPrintTest4
Testing/Code/Algorithms/itkAlgorithmsPrintTests
Testing/Code/Algorithms/itkAlgorithmsTests3
Testing/Code/Algorithms/itkBinaryThinningImageFilterTest
Testing/Code/Algorithms/itkBioCellTest
Testing/Code/Algorithms/itkBioCellularAggregateTest
Testing/Code/Algorithms/itkBioGenomeTest
Testing/Code/Algorithms/itkKappaStatisticImageToImageMetricTest
Testing/Code/Algorithms/itkMatchCardinalityImageToImageMetricTest
Testing/Code/Algorithms/itkOtsuMultipleThresholdsImageFilterTest
Testing/Code/Algorithms/itkScalarImageKmeansImageFilterTest
Testing/Code/Algorithms/itkSimplexMeshVolumeCalculatorTest

Testing/Code/Numerics/itkPowellOptimizerTest

Testing/Code/SpatialObject/itkArrowSpatialObjectTest
Testing/Code/SpatialObject/itkCylinderSpatialObjectTest
Testing/Code/SpatialObject/itkSpatialObjectTests2

Testing/Code/Patented/CMakeLists.txt
Testing/Code/Patented/itkActiveShapeModelCalculatorTest
Testing/Code/Patented/itkPatentedHeaderTest
Testing/Code/Patented/itkPatentedPrintTest
Testing/Code/Patented/itkPatentedTests
Testing/Code/Patented/itkSimpleFuzzyConnectednessScalarImageFilterTest
Testing/Code/Patented/itkVectorFuzzyConnectednessImageFilterTest

New Examples in this Release

Examples/DataRepresentation/Image/ImageExamples
Examples/DataRepresentation/Mesh/MeshExamples

Examples/Filtering/AntiAliasBinaryImageFilter
Examples/Filtering/BinaryMedianImageFilter
Examples/Filtering/FFTImageFilter
Examples/Filtering/FilteringExamples3
Examples/Filtering/FilteringExamples4
Examples/Filtering/MorphologicalImageEnhancement
Examples/Filtering/OtsuMultipleThresholdImageFilter
Examples/Filtering/OtsuThresholdImageFilter
Examples/Filtering/ResampleImageFilter7
Examples/Filtering/ResampleImageFilter8
Examples/Filtering/ResampleImageFilter9
Examples/Filtering/VotingBinaryHoleFillingImageFilter
Examples/Filtering/VotingBinaryIterativeHoleFillingImageFilter

Examples/IO/DicomImageReadChangeHeaderWrite
Examples/IO/DicomImageReadPrintTags
Examples/IO/DicomImageReadWrite
Examples/IO/DicomSeriesReadPrintTags
Examples/IO/DicomSeriesReadSeriesWrite
Examples/IO/DicomSliceRead.java
Examples/IO/DicomSliceRead.py
Examples/IO/DicomSliceRead.tcl

Examples/Patented/CMakeLists.txt
Examples/Patented/FuzzyConnectednessImageFilter
Examples/Patented/HybridSegmentationFuzzyVoronoi
Examples/Patented/IterativeClosestPoint1
Examples/Patented/IterativeClosestPoint2
Examples/Patented/IterativeClosestPoint3
Examples/Patented/PatentedExamples

Examples/Registration/DeformableRegistration7
Examples/Registration/DeformableRegistration8
Examples/Registration/DeformationFieldJacobian
Examples/Registration/RegistrationExamples8

Examples/Statistics/ImageHistogram4
Examples/Statistics/ScalarImageKmeansClassifier
Examples/Statistics/ScalarImageKmeansModelEstimator
Examples/Statistics/ScalarImageMarkovRandomField1

New Utilities in this Release

Utilities/gdcm/AUTHORS
Utilities/gdcm/ChangeLog
Utilities/gdcm/CMakeLists.txt
Utilities/gdcm/DEVELOPPER
Utilities/gdcm/Dicts/CMakeLists.txt
Utilities/gdcm/Dicts/DicomDir.d
Utilities/gdcm/Dicts/dicomTS.d
Utilities/gdcm/Dicts/dicomV3.d
Utilities/gdcm/Dicts/dicomVR.d
Utilities/gdcm/Dicts/README
Utilities/gdcm/gdcmConfigure.h.in
Utilities/gdcm/gdcm.spec.in
Utilities/gdcm/INSTALL
Utilities/gdcm/PACKAGER
Utilities/gdcm/README
Utilities/gdcm/README.ITK.txt
Utilities/gdcm/src/CMakeLists.txt
Utilities/gdcm/src/gdcm
Utilities/gdcm/src/gdcmBinEntry
Utilities/gdcm/src/gdcmCommon
Utilities/gdcm/src/gdcmDebug
Utilities/gdcm/src/gdcmDefaultDicts.cxx.in
Utilities/gdcm/src/gdcmDicomDir
Utilities/gdcm/src/gdcmDicomDirElement
Utilities/gdcm/src/gdcmDicomDirImage
Utilities/gdcm/src/gdcmDicomDirMeta
Utilities/gdcm/src/gdcmDicomDirObject
Utilities/gdcm/src/gdcmDicomDirPatient
Utilities/gdcm/src/gdcmDicomDirSerie
Utilities/gdcm/src/gdcmDicomDirStudy
Utilities/gdcm/src/gdcmDict
Utilities/gdcm/src/gdcmDictEntry
Utilities/gdcm/src/gdcmDictSet
Utilities/gdcm/src/gdcmDirList
Utilities/gdcm/src/gdcmDocEntry
Utilities/gdcm/src/gdcmDocEntrySet
Utilities/gdcm/src/gdcmDocument
Utilities/gdcm/src/gdcmElementSet
Utilities/gdcm/src/gdcmException
Utilities/gdcm/src/gdcmFile
Utilities/gdcm/src/gdcmGlobal
Utilities/gdcm/src/gdcmJpeg
Utilities/gdcm/src/gdcmJpeg12
Utilities/gdcm/src/gdcmJpeg16
Utilities/gdcm/src/gdcmJpeg2000
Utilities/gdcm/src/gdcmJpeg8
Utilities/gdcm/src/gdcmJPEGFragment
Utilities/gdcm/src/gdcmJPEGFragmentsInfo
Utilities/gdcm/src/gdcmRLEFrame
Utilities/gdcm/src/gdcmRLEFramesInfo
Utilities/gdcm/src/gdcmSeqEntry
Utilities/gdcm/src/gdcmSQItem
Utilities/gdcm/src/gdcmTS
Utilities/gdcm/src/gdcmUtil
Utilities/gdcm/src/gdcmValEntry
Utilities/gdcm/src/gdcmVR
Utilities/gdcm/src/jdatadst
Utilities/gdcm/src/jdatas
Utilities/itkjpeg/12/CMakeLists.txt
Utilities/itkjpeg/16/CMakeLists.txt
Utilities/itkjpeg/8/CMakeLists.txt
Utilities/itkjpeg/change.log
Utilities/itkjpeg/CMakeLists.txt
Utilities/itkjpeg/COPYRIGHT.dcmtk
Utilities/itkjpeg/filelist.d
Utilities/itkjpeg/install.d
Utilities/itkjpeg/jaricom
Utilities/itkjpeg/jcapimin
Utilities/itkjpeg/jcapistd
Utilities/itkjpeg/jcari
Utilities/itkjpeg/jccoefct
Utilities/itkjpeg/jccolor
Utilities/itkjpeg/jcdctmgr
Utilities/itkjpeg/jcdiffct
Utilities/itkjpeg/jchuff
Utilities/itkjpeg/jcinit
Utilities/itkjpeg/jclhuff
Utilities/itkjpeg/jclossls
Utilities/itkjpeg/jclossy
Utilities/itkjpeg/jcmainct
Utilities/itkjpeg/jcmarker
Utilities/itkjpeg/jcmaster
Utilities/itkjpeg/jcodec
Utilities/itkjpeg/jcomapi
Utilities/itkjpeg/jconfig.d
Utilities/itkjpeg/jconfig.h.in
Utilities/itkjpeg/jcparam
Utilities/itkjpeg/jcphuff
Utilities/itkjpeg/jcpred
Utilities/itkjpeg/jcprepct
Utilities/itkjpeg/jcsample
Utilities/itkjpeg/jcscale
Utilities/itkjpeg/jcshuff
Utilities/itkjpeg/jctrans
Utilities/itkjpeg/jdapimin
Utilities/itkjpeg/jdapistd
Utilities/itkjpeg/jdari
Utilities/itkjpeg/jdatadst
Utilities/itkjpeg/jdatasrc
Utilities/itkjpeg/jdcoefct
Utilities/itkjpeg/jdcolor
Utilities/itkjpeg/jdct
Utilities/itkjpeg/jddctmgr
Utilities/itkjpeg/jddiffct
Utilities/itkjpeg/jdhuff
Utilities/itkjpeg/jdinput
Utilities/itkjpeg/jdlhuff
Utilities/itkjpeg/jdlossls
Utilities/itkjpeg/jdlossy
Utilities/itkjpeg/jdmainct
Utilities/itkjpeg/jdmarker
Utilities/itkjpeg/jdmaster
Utilities/itkjpeg/jdmerge
Utilities/itkjpeg/jdphuff
Utilities/itkjpeg/jdpostct
Utilities/itkjpeg/jdpred
Utilities/itkjpeg/jdsample
Utilities/itkjpeg/jdscale
Utilities/itkjpeg/jdshuff
Utilities/itkjpeg/jdtrans
Utilities/itkjpeg/jerror
Utilities/itkjpeg/jfdctflt
Utilities/itkjpeg/jfdctfst
Utilities/itkjpeg/jfdctint
Utilities/itkjpeg/jidctflt
Utilities/itkjpeg/jidctfst
Utilities/itkjpeg/jidctint
Utilities/itkjpeg/jidctred
Utilities/itkjpeg/jinclude
Utilities/itkjpeg/jlossls
Utilities/itkjpeg/jlossy
Utilities/itkjpeg/jmemmgr
Utilities/itkjpeg/jmemnobs
Utilities/itkjpeg/jmemsys
Utilities/itkjpeg/jmorecfg.h.in
Utilities/itkjpeg/jpegDllConfig.h.in
Utilities/itkjpeg/jpegint
Utilities/itkjpeg/jpeglib
Utilities/itkjpeg/jquant1
Utilities/itkjpeg/jquant2
Utilities/itkjpeg/jutils
Utilities/itkjpeg/jversion
Utilities/itkjpeg/libjpeg.d
Utilities/itkjpeg/mangle_jpeg12bits
Utilities/itkjpeg/mangle_jpeg16bits
Utilities/itkjpeg/mangle_jpeg8bits
Utilities/itkjpeg/.NoDartCoverage
Utilities/itkjpeg/README
Utilities/itkjpeg/README.GDCM.txt
Utilities/itkjpeg/README.ITK.txt
Utilities/itkjpeg/structure.d
Utilities/kwsys/CommandLineArguments
Utilities/kwsys/CommandLineArguments.hxx.in
Utilities/kwsys/testCommandLineArguments
Utilities/MetaIO/metaArrow
Utilities/MetaIO/metaDTITube
Utilities/MetaIO/metaVesselTube
Utilities/NrrdIO/itk_NrrdIO_mangle
Utilities/NrrdIO/.NoDartCoverage


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