Connectome:Future: Difference between revisions
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[[category:connectome]] | |||
= Current Progress on Connectome = | = Current Progress on Connectome = | ||
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== Image Storage and Analysis Powerhouse == | == Image Storage and Analysis Powerhouse == | ||
Reference: [[IMViewer]] | |||
* For pathology | |||
* For connectome | |||
* Annotaions | |||
= Future Proposals = | = Future Proposals = | ||
== Acquisition Toolkit == | |||
* Development as an enhancement to [http://www.micro-manager.org/ | Micro Manager] | |||
* Present the complete acquisition, stitch / merge, store, manage, process pipeline | |||
== Light Microscopy == | == Light Microscopy == | ||
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** Fluorensence | ** Fluorensence | ||
== Pathology == | == Digital Pathology == | ||
* Development of new automated algorithms | * Development of an open source toolkit for | ||
** | ** Development and validation of new automated algorithms | ||
** Enriching domain specific knowledge | |||
** Integration with Midas for storing annotating and analyzing large images | |||
Latest revision as of 16:05, 10 March 2011
Current Progress on Connectome
Image Acquisition Toolkit
- Acquisition
- Alignment
- Stitching
- Overlatpping stacks
- separate sections
Image Storage and Analysis Powerhouse
Reference: IMViewer
- For pathology
- For connectome
- Annotaions
Future Proposals
Acquisition Toolkit
- Development as an enhancement to | Micro Manager
- Present the complete acquisition, stitch / merge, store, manage, process pipeline
Light Microscopy
- Future of acquisition toolkit
- Image database
- Future of Open SSECRET like viewer for navigation
- A toolkit specialized at brainbow like imagery
- Especially contrasting the tools developed for EM
- Advantages of light over
- EM more high res - synaptic patterns
- Fluorensence
Digital Pathology
- Development of an open source toolkit for
- Development and validation of new automated algorithms
- Enriching domain specific knowledge
- Integration with Midas for storing annotating and analyzing large images
