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| ==WatershedImageFilter.cxx== | | {{warning|1=The media wiki content on this page is no longer maintained. The examples presented on the https://itk.org/Wiki/* pages likely require ITK version 4.13 or earlier releases. In many cases, the examples on this page no longer conform to the best practices for modern ITK versions. |
| <source lang="cpp">
| | }} |
| #include <iostream>
| |
|
| |
|
| #include "itkImageFileReader.h"
| | [https://itk.org/ITKExamples[ITK Sphinx Examples]] |
| #include "itkImageFileWriter.h"
| |
| #include "itkScalarToRGBPixelFunctor.h"
| |
| #include "itkUnaryFunctorImageFilter.h"
| |
| #include "itkVectorCastImageFilter.h"
| |
| #include "itkVectorGradientAnisotropicDiffusionImageFilter.h"
| |
| #include "itkWatershedImageFilter.h"
| |
| #include "itkRescaleIntensityImageFilter.h"
| |
| #include "itkScalarToRGBColormapImageFilter.h"
| |
| #include "itkGradientMagnitudeImageFilter.h"
| |
| | |
| // Run with:
| |
| // ./WatershedImageFilter threshold level
| |
| // e.g.
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| // ./WatershedImageFilter 0.005 .5
| |
| // (A rule of thumb is to set the Threshold to be about 1 / 100 of the Level.)
| |
| | |
| typedef itk::Image<unsigned char, 2> UnsignedCharImageType;
| |
| typedef itk::Image<float, 2> FloatImageType;
| |
| typedef itk::RGBPixel<unsigned char> RGBPixelType;
| |
| typedef itk::Image<RGBPixelType, 2> RGBImageType;
| |
| typedef itk::Image<unsigned long, 2> LabeledImageType;
| |
| | |
| static void CreateImage(UnsignedCharImageType::Pointer image);
| |
| static void PerformSegmentation(FloatImageType::Pointer image, const float threshold, const float level);
| |
| | |
| int main( int argc, char *argv[] )
| |
| {
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| // Verify arguments
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| if (argc < 3 )
| |
| {
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| std::cerr << "Parameters " << std::endl;
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| std::cerr << " threshold level" << std::endl;
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| return 1;
| |
| }
| |
| | |
| // Parse arguments
| |
| std::string strThreshold = argv[1];
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| float threshold = 0.0;
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| std::stringstream ssThreshold;
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| ssThreshold << strThreshold;
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| ssThreshold >> threshold;
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|
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| std::string strLevel = argv[2];
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| float level = 0.0;
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| std::stringstream ssLevel;
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| ssLevel << strLevel;
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| ssLevel >> level;
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|
| |
| // Output arguments
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| std::cout << "Running with:" << std::endl
| |
| << "Threshold: " << threshold << std::endl
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| << "Level: " << level << std::endl;
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|
| |
| UnsignedCharImageType::Pointer image = UnsignedCharImageType::New();
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| CreateImage(image);
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|
| |
| typedef itk::GradientMagnitudeImageFilter<
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| UnsignedCharImageType, FloatImageType > GradientMagnitudeImageFilterType;
| |
| GradientMagnitudeImageFilterType::Pointer gradientMagnitudeImageFilter = GradientMagnitudeImageFilterType::New();
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| gradientMagnitudeImageFilter->SetInput(image);
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| gradientMagnitudeImageFilter->Update();
| |
| | |
| // Custom parameters
| |
| PerformSegmentation(gradientMagnitudeImageFilter->GetOutput(), threshold, level);
| |
|
| |
| // Fixed parameters
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| PerformSegmentation(gradientMagnitudeImageFilter->GetOutput(), .0025, .25);
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| PerformSegmentation(gradientMagnitudeImageFilter->GetOutput(), .005, .5);
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| PerformSegmentation(gradientMagnitudeImageFilter->GetOutput(), .0075, .75);
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| PerformSegmentation(gradientMagnitudeImageFilter->GetOutput(), .009, .9);
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|
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| return EXIT_SUCCESS;
| |
| }
| |
| | |
| | |
| void CreateImage(UnsignedCharImageType::Pointer image)
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| {
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| // Create a white image with 3 dark regions of different values
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|
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| itk::Index<2> start;
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| start.Fill(0);
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| | |
| itk::Size<2> size;
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| size.Fill(200);
| |
| | |
| itk::ImageRegion<2> region(start,size);
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| image->SetRegions(region);
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| image->Allocate();
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| image->FillBuffer(255);
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| | |
| itk::ImageRegionIterator<UnsignedCharImageType> imageIterator(image,region);
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|
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| while(!imageIterator.IsAtEnd())
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| {
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| if(imageIterator.GetIndex()[0] > 20 && imageIterator.GetIndex()[0] < 50 &&
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| imageIterator.GetIndex()[1] > 20 && imageIterator.GetIndex()[1] < 50)
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| imageIterator.Set(50);
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|
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| ++imageIterator;
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| }
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|
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| imageIterator.GoToBegin();
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|
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| while(!imageIterator.IsAtEnd())
| |
| {
| |
| if(imageIterator.GetIndex()[0] > 60 && imageIterator.GetIndex()[0] < 80 &&
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| imageIterator.GetIndex()[1] > 60 && imageIterator.GetIndex()[1] < 80)
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| imageIterator.Set(100);
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|
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| ++imageIterator;
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| }
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|
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| imageIterator.GoToBegin();
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|
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| while(!imageIterator.IsAtEnd())
| |
| {
| |
| if(imageIterator.GetIndex()[0] > 100 && imageIterator.GetIndex()[0] < 130 &&
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| imageIterator.GetIndex()[1] > 100 && imageIterator.GetIndex()[1] < 130)
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| imageIterator.Set(150);
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|
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| ++imageIterator;
| |
| }
| |
|
| |
| typedef itk::ImageFileWriter<UnsignedCharImageType> FileWriterType;
| |
| FileWriterType::Pointer writer = FileWriterType::New();
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| writer->SetFileName("input.png");
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| writer->SetInput(image);
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| writer->Update();
| |
| }
| |
| | |
| void PerformSegmentation(FloatImageType::Pointer image, const float threshold, const float level)
| |
| {
| |
| typedef itk::WatershedImageFilter<FloatImageType> WatershedFilterType;
| |
| WatershedFilterType::Pointer watershed = WatershedFilterType::New();
| |
| watershed->SetThreshold(threshold);
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| watershed->SetLevel(level);
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| watershed->SetInput(image);
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| watershed->Update();
| |
| | |
| typedef itk::ScalarToRGBColormapImageFilter<LabeledImageType, RGBImageType> RGBFilterType;
| |
| RGBFilterType::Pointer colormapImageFilter = RGBFilterType::New();
| |
| colormapImageFilter->SetInput(watershed->GetOutput());
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| colormapImageFilter->SetColormap( RGBFilterType::Jet );
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| colormapImageFilter->Update();
| |
| | |
| std::stringstream ss;
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| ss << "output_" << threshold << "_" << level << ".png";
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|
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| typedef itk::ImageFileWriter<RGBImageType> FileWriterType;
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| FileWriterType::Pointer writer = FileWriterType::New();
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| writer->SetFileName(ss.str());
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| writer->SetInput(colormapImageFilter->GetOutput());
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| writer->Update();
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|
| |
| }
| |
| | |
| </source>
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| | |
| {{ITKCMakeLists|{{SUBPAGENAME}}}}
| |
